Circular dichroism spectroscopy reveals invariant conformation of guanine runs in DNA. 2002

Jaroslav Kypr, and Michaela Vorlícková
Institute of Biophysics of the Academy of Sciences of the Czech Republic, Královopolská 135, CZ-612 65 Brno, Czech Republic. mifi@ibp.cz

We demonstrate that the characteristic circular dichroism (CD) features of the parallel-stranded DNA tetraplex of d(G4), especially the strong band at 260 nm, are characteristic for the B and A forms of the antiparallel duplex of d(C4G4). Hence, this band evidently originates from intrastrand guanine-guanine stacking, which is therefore very similar in the duplex and tetraplex DNA. In addition, the same type of the CD spectrum is provided by the ordered single strand of d(GA)10. This observation suggests that the ordered single strand of d(GA)10 is stabilized by a core of guanines stacked like in the parallel tetraplex. This view is used to start the modeling of the molecular structure of the ordered d(GA)10 single strand. Our studies suggest that guanine itself is strong enough to stabilize various secondary structures of DNA, which is a property relevant to thinking about the origin and evolution of molecular replicators.

UI MeSH Term Description Entries
D009690 Nucleic Acid Conformation The spatial arrangement of the atoms of a nucleic acid or polynucleotide that results in its characteristic 3-dimensional shape. DNA Conformation,RNA Conformation,Conformation, DNA,Conformation, Nucleic Acid,Conformation, RNA,Conformations, DNA,Conformations, Nucleic Acid,Conformations, RNA,DNA Conformations,Nucleic Acid Conformations,RNA Conformations
D002942 Circular Dichroism A change from planar to elliptic polarization when an initially plane-polarized light wave traverses an optically active medium. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) Circular Dichroism, Vibrational,Dichroism, Circular,Vibrational Circular Dichroism
D004247 DNA A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine). DNA, Double-Stranded,Deoxyribonucleic Acid,ds-DNA,DNA, Double Stranded,Double-Stranded DNA,ds DNA
D006147 Guanine
D019281 Dimerization The process by which two molecules of the same chemical composition form a condensation product or polymer. Dimerizations

Related Publications

Jaroslav Kypr, and Michaela Vorlícková
April 1979, Biopolymers,
Jaroslav Kypr, and Michaela Vorlícková
January 1992, Methods in enzymology,
Jaroslav Kypr, and Michaela Vorlícková
October 1978, Proceedings of the National Academy of Sciences of the United States of America,
Jaroslav Kypr, and Michaela Vorlícková
January 2017, Methods in molecular biology (Clifton, N.J.),
Jaroslav Kypr, and Michaela Vorlícková
July 2014, Angewandte Chemie (International ed. in English),
Jaroslav Kypr, and Michaela Vorlícková
June 1984, Bioorganicheskaia khimiia,
Jaroslav Kypr, and Michaela Vorlícková
October 1983, Biochemistry international,
Jaroslav Kypr, and Michaela Vorlícková
May 2012, Methods (San Diego, Calif.),
Jaroslav Kypr, and Michaela Vorlícková
July 2016, Journal of chemical theory and computation,
Jaroslav Kypr, and Michaela Vorlícková
February 2013, Analytical chemistry,
Copied contents to your clipboard!