Phylogenetic classification of transporters and other membrane proteins from Saccharomyces cerevisiae. 2002

Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
Unité de Génétique, Faculté d'Agronomie, Université Catholique de Louvain, Louvain-la-Neuve, Belgium.

On the basis of functional and phylogenetic criteria, we have identified a total of 229 subfamilies and 111 singletons predicted to carry out transport or other membrane functions in Saccharomyces cerevisiae. We have extended the Transporter Classification (TC) and created a Membrane Classification (MC) for non-transporter membrane proteins. Using the preliminary phylogenetic digits X, Y, Z (for new families, subfamilies, and clusters, respectively), we allocated a five-digit number to 850 proteins predicted to contain more than two transmembrane domains. Compared with a previous TC of the yeast genome, we classified an additional set of 538 membrane proteins (transporters and non-transporters) and identified 111 novel phylogenetic subfamilies.

UI MeSH Term Description Entries
D008565 Membrane Proteins Proteins which are found in membranes including cellular and intracellular membranes. They consist of two types, peripheral and integral proteins. They include most membrane-associated enzymes, antigenic proteins, transport proteins, and drug, hormone, and lectin receptors. Cell Membrane Protein,Cell Membrane Proteins,Cell Surface Protein,Cell Surface Proteins,Integral Membrane Proteins,Membrane-Associated Protein,Surface Protein,Surface Proteins,Integral Membrane Protein,Membrane Protein,Membrane-Associated Proteins,Membrane Associated Protein,Membrane Associated Proteins,Membrane Protein, Cell,Membrane Protein, Integral,Membrane Proteins, Integral,Protein, Cell Membrane,Protein, Cell Surface,Protein, Integral Membrane,Protein, Membrane,Protein, Membrane-Associated,Protein, Surface,Proteins, Cell Membrane,Proteins, Cell Surface,Proteins, Integral Membrane,Proteins, Membrane,Proteins, Membrane-Associated,Proteins, Surface,Surface Protein, Cell
D010802 Phylogeny The relationships of groups of organisms as reflected by their genetic makeup. Community Phylogenetics,Molecular Phylogenetics,Phylogenetic Analyses,Phylogenetic Analysis,Phylogenetic Clustering,Phylogenetic Comparative Analysis,Phylogenetic Comparative Methods,Phylogenetic Distance,Phylogenetic Generalized Least Squares,Phylogenetic Groups,Phylogenetic Incongruence,Phylogenetic Inference,Phylogenetic Networks,Phylogenetic Reconstruction,Phylogenetic Relatedness,Phylogenetic Relationships,Phylogenetic Signal,Phylogenetic Structure,Phylogenetic Tree,Phylogenetic Trees,Phylogenomics,Analyse, Phylogenetic,Analysis, Phylogenetic,Analysis, Phylogenetic Comparative,Clustering, Phylogenetic,Community Phylogenetic,Comparative Analysis, Phylogenetic,Comparative Method, Phylogenetic,Distance, Phylogenetic,Group, Phylogenetic,Incongruence, Phylogenetic,Inference, Phylogenetic,Method, Phylogenetic Comparative,Molecular Phylogenetic,Network, Phylogenetic,Phylogenetic Analyse,Phylogenetic Clusterings,Phylogenetic Comparative Analyses,Phylogenetic Comparative Method,Phylogenetic Distances,Phylogenetic Group,Phylogenetic Incongruences,Phylogenetic Inferences,Phylogenetic Network,Phylogenetic Reconstructions,Phylogenetic Relatednesses,Phylogenetic Relationship,Phylogenetic Signals,Phylogenetic Structures,Phylogenetic, Community,Phylogenetic, Molecular,Phylogenies,Phylogenomic,Reconstruction, Phylogenetic,Relatedness, Phylogenetic,Relationship, Phylogenetic,Signal, Phylogenetic,Structure, Phylogenetic,Tree, Phylogenetic
D012441 Saccharomyces cerevisiae A species of the genus SACCHAROMYCES, family Saccharomycetaceae, order Saccharomycetales, known as "baker's" or "brewer's" yeast. The dried form is used as a dietary supplement. Baker's Yeast,Brewer's Yeast,Candida robusta,S. cerevisiae,Saccharomyces capensis,Saccharomyces italicus,Saccharomyces oviformis,Saccharomyces uvarum var. melibiosus,Yeast, Baker's,Yeast, Brewer's,Baker Yeast,S cerevisiae,Baker's Yeasts,Yeast, Baker
D029701 Saccharomyces cerevisiae Proteins Proteins obtained from the species SACCHAROMYCES CEREVISIAE. The function of specific proteins from this organism are the subject of intense scientific interest and have been used to derive basic understanding of the functioning similar proteins in higher eukaryotes. Baker's Yeast Proteins,S cerevisiae Proteins

Related Publications

Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
January 2016, Advances in experimental medicine and biology,
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
November 1979, Biochimica et biophysica acta,
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
May 1997, Yeast (Chichester, England),
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
February 2005, The Journal of biological chemistry,
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
December 2002, Proteomics,
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
January 2022, Methods in molecular biology (Clifton, N.J.),
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
April 2001, Journal of molecular microbiology and biotechnology,
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
January 2020, Methods in molecular biology (Clifton, N.J.),
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
August 2000, Current opinion in cell biology,
Benoît De Hertogh, and Elvira Carvajal, and Emmanuel Talla, and Bernard Dujon, and Philippe Baret, and André Goffeau
January 2011, Postepy biochemii,
Copied contents to your clipboard!