Rotational diffusion tensor of nucleic acids from 13C NMR relaxation. 2003

Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-0520, U.S.A.

Rotational diffusion properties have been derived for the DNA dodecamer d(CGCGAATTCGCG)(2) from (13)C R(1rho) and R(1) measurements on the C(1'), C(3'), and C(4') carbons in samples uniformly enriched in (13)C. The narrow range of C-H bond vector orientations relative to the DNA axis make the analysis particularly sensitive to small structural deviations. As a result, the R(1rho)/R(1) ratios are found to fit poorly to the crystal structures of this dodecamer, but well to a recent solution NMR structure, determined in liquid crystalline media, even though globally the structures are quite similar. A fit of the R(1rho)/R(1) ratios to the solution structure is optimal for an axially symmetric rotational diffusion model, with a diffusion anisotropy, D(\|)/D(perpendicular), of 2.1+/-0.4, and an overall rotational correlation time, (2D(\|)+4D(perpendicular))(-1), of 3.35 ns at 35 degrees C in D(2)O, in excellent agreement with values obtained from hydrodynamic modeling.

UI MeSH Term Description Entries
D009682 Magnetic Resonance Spectroscopy Spectroscopic method of measuring the magnetic moment of elementary particles such as atomic nuclei, protons or electrons. It is employed in clinical applications such as NMR Tomography (MAGNETIC RESONANCE IMAGING). In Vivo NMR Spectroscopy,MR Spectroscopy,Magnetic Resonance,NMR Spectroscopy,NMR Spectroscopy, In Vivo,Nuclear Magnetic Resonance,Spectroscopy, Magnetic Resonance,Spectroscopy, NMR,Spectroscopy, Nuclear Magnetic Resonance,Magnetic Resonance Spectroscopies,Magnetic Resonance, Nuclear,NMR Spectroscopies,Resonance Spectroscopy, Magnetic,Resonance, Magnetic,Resonance, Nuclear Magnetic,Spectroscopies, NMR,Spectroscopy, MR
D009690 Nucleic Acid Conformation The spatial arrangement of the atoms of a nucleic acid or polynucleotide that results in its characteristic 3-dimensional shape. DNA Conformation,RNA Conformation,Conformation, DNA,Conformation, Nucleic Acid,Conformation, RNA,Conformations, DNA,Conformations, Nucleic Acid,Conformations, RNA,DNA Conformations,Nucleic Acid Conformations,RNA Conformations
D009696 Nucleic Acids High molecular weight polymers containing a mixture of purine and pyrimidine nucleotides chained together by ribose or deoxyribose linkages. Nucleic Acid,Acid, Nucleic,Acids, Nucleic
D002247 Carbon Isotopes Stable carbon atoms that have the same atomic number as the element carbon but differ in atomic weight. C-13 is a stable carbon isotope. Carbon Isotope,Isotope, Carbon,Isotopes, Carbon

Related Publications

Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
August 2011, The journal of physical chemistry. A,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
April 1997, Journal of biomolecular NMR,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
October 1997, Journal of biomolecular NMR,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
July 1996, Magnetic resonance in medicine,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
October 1976, Journal of the American Chemical Society,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
April 2000, Journal of biomolecular NMR,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
August 2005, Journal of the American Chemical Society,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
March 2008, Magnetic resonance in chemistry : MRC,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
May 2018, The journal of physical chemistry. B,
Jerome Boisbouvier, and Zhengrong Wu, and Arika Ono, and Masatsune Kainosho, and Ad Bax
October 1996, Journal of biomolecular NMR,
Copied contents to your clipboard!