During orthodontic treatment, it is often necessary to move the hypofunctional teeth. In this study, we revealed an influence of orthodontic forces in the hypofunctional periodontal ligament, and focused on the distribution of proteoglycans, major extracellular matrix molecules. Five-week-old rats were divided into normal group and hypofunctional group. To induce occlusal hypofunction, occluding teeth of the mandibular first molar were extracted. At 8-week-old, orthodontic force by 15 or 2 gf titanium-nickel alloy closed coil spring was applied to the mandibular first molar toward the mesial direction. Immunohistochemical analysis was performed using antibodies for chondroitin sulfate (CS) and heparan sulfate (HS). In normal group, CS was observed throughout the extracellular matrix, while HS was observed on the endothelial cells and the osteoclastic cells on compressive side. In hypofunctional group without orthodontic appliance, CS and HS were detected in less amounts. With 15 gf, CS was observed at the compressive area where no cells and fibers were present, and HS was observed at the periphery of this area. With 2 gf, however, the distribution of CS and HS was similar to the normal control. These findings indicate that CS and HS were affected by orthodontic forces, and suggest their distinct functions in tissue remodeling.