The molecular origin of the thiamine diphosphate-induced spectral bands of ThDP-dependent enzymes. 2004

Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
A.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.

New and previously published data on a variety of ThDP-dependent enzymes such as baker's yeast transketolase, yeast pyruvate decarboxylase and pyruvate dehydrogenase from pigeon breast muscle, bovine heart, bovine kidney, Neisseria meningitidis and E. coli show their spectral sensitivity to ThDP binding. Although ThDP-induced spectral changes are different for different enzymes, their universal origin is suggested as being caused by the intrinsic absorption of the pyrimidine ring of ThDP, bound in different tautomeric forms with different enzymes. Non-enzymatic models with pyrimidine-like compounds indicate that the specific protein environment of the aminopyrimidine ring of ThDP determines its tautomeric form and therefore the changeable features of the inducible effect. A polar environment causes the prevalence of the aminopyrimidine tautomeric form (short wavelength region is affected). For stabilization of the iminopyrimidine tautomeric form (both short- and long-wavelength regions are affected) two factors appear essential: (i) a nonpolar environment and (ii) a conservative carboxyl group of a specific glutamate residue interacting with the N1' atom of the aminopyrimidine ring. The two types of optical effect depend in a different way upon the pH, in full accordance with the hypothesis tested. From these studies it is concluded that the inducible optical rotation results from interaction of the aminopyrimidine ring with its asymmetric environment and is defined by the protonation state of N1' and the 4'-nitrogen.

UI MeSH Term Description Entries
D008049 Lipase An enzyme of the hydrolase class that catalyzes the reaction of triacylglycerol and water to yield diacylglycerol and a fatty acid anion. It is produced by glands on the tongue and by the pancreas and initiates the digestion of dietary fats. (From Dorland, 27th ed) EC 3.1.1.3. Triacylglycerol Lipase,Tributyrinase,Triglyceride Lipase,Acid Lipase,Acid Lipase A,Acid Lipase B,Acid Lipase I,Acid Lipase II,Exolipase,Monoester Lipase,Triacylglycerol Hydrolase,Triglyceridase,Triolean Hydrolase,Hydrolase, Triacylglycerol,Hydrolase, Triolean,Lipase A, Acid,Lipase B, Acid,Lipase I, Acid,Lipase II, Acid,Lipase, Acid,Lipase, Monoester,Lipase, Triglyceride
D008958 Models, Molecular Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures. Molecular Models,Model, Molecular,Molecular Model
D009206 Myocardium The muscle tissue of the HEART. It is composed of striated, involuntary muscle cells (MYOCYTES, CARDIAC) connected to form the contractile pump to generate blood flow. Muscle, Cardiac,Muscle, Heart,Cardiac Muscle,Myocardia,Cardiac Muscles,Heart Muscle,Heart Muscles,Muscles, Cardiac,Muscles, Heart
D009345 Neisseria meningitidis A species of gram-negative, aerobic BACTERIA. It is a commensal and pathogen only of humans, and can be carried asymptomatically in the NASOPHARYNX. When found in cerebrospinal fluid it is the causative agent of cerebrospinal meningitis (MENINGITIS, MENINGOCOCCAL). It is also found in venereal discharges and blood. There are at least 13 serogroups based on antigenic differences in the capsular polysaccharides; the ones causing most meningitis infections being A, B, C, Y, and W-135. Each serogroup can be further classified by serotype, serosubtype, and immunotype. Diplokokkus intracellularis meningitidis,Meningococcus,Micrococcus intracellularis,Micrococcus meningitidis,Micrococcus meningitidis cerebrospinalis,Neisseria weichselbaumii
D011743 Pyrimidines A family of 6-membered heterocyclic compounds occurring in nature in a wide variety of forms. They include several nucleic acid constituents (CYTOSINE; THYMINE; and URACIL) and form the basic structure of the barbiturates.
D011767 Pyruvate Decarboxylase Catalyzes the decarboxylation of an alpha keto acid to an aldehyde and carbon dioxide. Thiamine pyrophosphate is an essential cofactor. In lower organisms, which ferment glucose to ethanol and carbon dioxide, the enzyme irreversibly decarboxylates pyruvate to acetaldehyde. EC 4.1.1.1. 2-Oxo Acid Carboxy-Lyase,Pyruvic Decarboxylase,alpha-Carboxylase,alpha-Ketoacid Carboxylase,2 Oxo Acid Carboxy Lyase,Acid Carboxy-Lyase, 2-Oxo,Carboxy-Lyase, 2-Oxo Acid,Carboxylase, alpha-Ketoacid,Decarboxylase, Pyruvate,Decarboxylase, Pyruvic,alpha Carboxylase,alpha Ketoacid Carboxylase
D011993 Recombinant Fusion Proteins Recombinant proteins produced by the GENETIC TRANSLATION of fused genes formed by the combination of NUCLEIC ACID REGULATORY SEQUENCES of one or more genes with the protein coding sequences of one or more genes. Fusion Proteins, Recombinant,Recombinant Chimeric Protein,Recombinant Fusion Protein,Recombinant Hybrid Protein,Chimeric Proteins, Recombinant,Hybrid Proteins, Recombinant,Recombinant Chimeric Proteins,Recombinant Hybrid Proteins,Chimeric Protein, Recombinant,Fusion Protein, Recombinant,Hybrid Protein, Recombinant,Protein, Recombinant Chimeric,Protein, Recombinant Fusion,Protein, Recombinant Hybrid,Proteins, Recombinant Chimeric,Proteins, Recombinant Fusion,Proteins, Recombinant Hybrid
D002417 Cattle Domesticated bovine animals of the genus Bos, usually kept on a farm or ranch and used for the production of meat or dairy products or for heavy labor. Beef Cow,Bos grunniens,Bos indicus,Bos indicus Cattle,Bos taurus,Cow,Cow, Domestic,Dairy Cow,Holstein Cow,Indicine Cattle,Taurine Cattle,Taurus Cattle,Yak,Zebu,Beef Cows,Bos indicus Cattles,Cattle, Bos indicus,Cattle, Indicine,Cattle, Taurine,Cattle, Taurus,Cattles, Bos indicus,Cattles, Indicine,Cattles, Taurine,Cattles, Taurus,Cow, Beef,Cow, Dairy,Cow, Holstein,Cows,Dairy Cows,Domestic Cow,Domestic Cows,Indicine Cattles,Taurine Cattles,Taurus Cattles,Yaks,Zebus
D002942 Circular Dichroism A change from planar to elliptic polarization when an initially plane-polarized light wave traverses an optically active medium. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) Circular Dichroism, Vibrational,Dichroism, Circular,Vibrational Circular Dichroism
D003198 Computer Simulation Computer-based representation of physical systems and phenomena such as chemical processes. Computational Modeling,Computational Modelling,Computer Models,In silico Modeling,In silico Models,In silico Simulation,Models, Computer,Computerized Models,Computer Model,Computer Simulations,Computerized Model,In silico Model,Model, Computer,Model, Computerized,Model, In silico,Modeling, Computational,Modeling, In silico,Modelling, Computational,Simulation, Computer,Simulation, In silico,Simulations, Computer

Related Publications

Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
September 2023, Bioorganic chemistry,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
August 2005, Biochemical Society transactions,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
August 2006, Accounts of chemical research,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
January 2009, Biotechnology progress,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
May 2023, ACS medicinal chemistry letters,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
January 2000, The Journal of biological chemistry,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
October 2014, Proteins,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
December 2013, The FEBS journal,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
May 2024, RSC medicinal chemistry,
Marina V Kovina, and Aart De Kok, and Irina A Sevostyanova, and Ludmila S Khailova, and Natalya V Belkina, and German A Kochetov
December 2014, Applied microbiology and biotechnology,
Copied contents to your clipboard!