A model for generating circadian rhythm by coupling ultradian oscillators. 2006

Verner Paetkau, and Roderick Edwards, and Reinhard Illner
Department of Biochemistry and Microbiology, University of Victoria Victoria, British Columbia, Canada. vhp@uvic.ca

BACKGROUND Organisms ranging from humans to cyanobacteria undergo circadian rhythm, that is, variations in behavior that cycle over a period about 24 hours in length. A fundamental property of circadian rhythm is that it is free-running, and continues with a period close to 24 hours in the absence of light cycles or other external cues. Regulatory networks involving feedback inhibition and feedforward stimulation of mRNA transcription and translation are thought to be critical for many circadian mechanisms, and genes coding for essential components of circadian rhythm have been identified in several organisms. However, it is not clear how such components are organized to generate a circadian oscillation. RESULTS We propose a model in which two independent transcriptional-translational oscillators with periods much shorter than 24 hours are coupled to drive a forced oscillator that has a circadian period, using mechanisms and parameters of conventional molecular biology. Furthermore, the resulting circadian oscillator can be entrained by an external light-dark cycle through known mechanisms. We rationalize the mathematical basis for the observed behavior of the model, and show that the behavior is not dependent on the details of the component ultradian oscillators but occurs even if quite generalized basic oscillators are used. CONCLUSIONS We conclude that coupled, independent, transcriptional-translational oscillators with relatively short periods can be the basis for circadian oscillators. The resulting circadian oscillator can be entrained by 24-hour light-dark cycles, and the model suggests a mechanism for its evolution.

UI MeSH Term Description Entries
D008954 Models, Biological Theoretical representations that simulate the behavior or activity of biological processes or diseases. For disease models in living animals, DISEASE MODELS, ANIMAL is available. Biological models include the use of mathematical equations, computers, and other electronic equipment. Biological Model,Biological Models,Model, Biological,Models, Biologic,Biologic Model,Biologic Models,Model, Biologic
D002940 Circadian Rhythm The regular recurrence, in cycles of about 24 hours, of biological processes or activities, such as sensitivity to drugs or environmental and physiological stimuli. Diurnal Rhythm,Nyctohemeral Rhythm,Twenty-Four Hour Rhythm,Nycthemeral Rhythm,Circadian Rhythms,Diurnal Rhythms,Nycthemeral Rhythms,Nyctohemeral Rhythms,Rhythm, Circadian,Rhythm, Diurnal,Rhythm, Nycthemeral,Rhythm, Nyctohemeral,Rhythm, Twenty-Four Hour,Rhythms, Circadian,Rhythms, Diurnal,Rhythms, Nycthemeral,Rhythms, Nyctohemeral,Rhythms, Twenty-Four Hour,Twenty Four Hour Rhythm,Twenty-Four Hour Rhythms
D005786 Gene Expression Regulation Any of the processes by which nuclear, cytoplasmic, or intercellular factors influence the differential control (induction or repression) of gene action at the level of transcription or translation. Gene Action Regulation,Regulation of Gene Expression,Expression Regulation, Gene,Regulation, Gene Action,Regulation, Gene Expression
D012333 RNA, Messenger RNA sequences that serve as templates for protein synthesis. Bacterial mRNAs are generally primary transcripts in that they do not require post-transcriptional processing. Eukaryotic mRNA is synthesized in the nucleus and must be exported to the cytoplasm for translation. Most eukaryotic mRNAs have a sequence of polyadenylic acid at the 3' end, referred to as the poly(A) tail. The function of this tail is not known for certain, but it may play a role in the export of mature mRNA from the nucleus as well as in helping stabilize some mRNA molecules by retarding their degradation in the cytoplasm. Messenger RNA,Messenger RNA, Polyadenylated,Poly(A) Tail,Poly(A)+ RNA,Poly(A)+ mRNA,RNA, Messenger, Polyadenylated,RNA, Polyadenylated,mRNA,mRNA, Non-Polyadenylated,mRNA, Polyadenylated,Non-Polyadenylated mRNA,Poly(A) RNA,Polyadenylated mRNA,Non Polyadenylated mRNA,Polyadenylated Messenger RNA,Polyadenylated RNA,RNA, Polyadenylated Messenger,mRNA, Non Polyadenylated
D017440 Photoperiod The time period of daily exposure that an organism receives from daylight or artificial light. It is believed that photoperiodic responses may affect the control of energy balance and thermoregulation. Dark-Light Cycle,Daylight Cycle,Light Cycle,Light-Dark Cycle,Cycle, Dark-Light,Cycle, Daylight,Cycle, Light,Cycle, Light-Dark,Cycles, Dark-Light,Cycles, Daylight,Cycles, Light,Cycles, Light-Dark,Dark Light Cycle,Dark-Light Cycles,Daylight Cycles,Light Cycles,Light Dark Cycle,Light-Dark Cycles,Photoperiods

Related Publications

Verner Paetkau, and Roderick Edwards, and Reinhard Illner
May 1997, Bulletin of mathematical biology,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
January 2007, Brain research bulletin,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
June 2006, Journal of biological rhythms,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
February 1985, Iyo denshi to seitai kogaku. Japanese journal of medical electronics and biological engineering,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
May 2001, Chronobiology international,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
May 2018, The journal of physiological sciences : JPS,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
June 1969, Archives of biochemistry and biophysics,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
July 2021, Science advances,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
June 2002, Journal of theoretical biology,
Verner Paetkau, and Roderick Edwards, and Reinhard Illner
January 1987, Journal of biological rhythms,
Copied contents to your clipboard!