Phylogenetic diversity of culturable bacteria from alpine permafrost in the Tianshan Mountains, northwestern China. 2006

Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
Key Laboratory of Arid and Grassland Agroecology of Ministry of Education, School of Life Sciences, Lanzhou University, Lanzhou Gansu 730000, PR China.

Microbes have been discovered in permafrost sediments for nearly a century. However, microbiological analyses of alpine permafrost are very scarce. This study is a first attempt to describe the phylogenetic diversity of a culturable bacterial community isolated from alpine permafrost in the Tianshan Mountains in northwestern China. Aerobic 2.5-6.0x10(5) CFU/gdw (CFU per 1 gram of dry weight) on modified PYGV medium were recovered from alpine permafrost samples at 4 degrees C; among these, 91 bacterial isolates with different morphotypes were characterized by phenotypic properties, such as morphology, colony pigmentation, Gram staining, endospore formation and temperature range of growth. The isolates were further categorized based on amplified rDNA restriction analysis (ARDRA), and 51 representative isolates possessing distinct ARDRA patterns selected for subsequent 16S rDNA sequencing and phylogenetic analysis. The phylogenetic trees placed the 51 isolates in four major groups: the high-G+C Gram-positives, the low-G+C Gram-positives, Proteobacteria and the Cytophaga-Flavobacterium-Bacteroides (CFB) phylum. The most abundant and diverse isolates were members of Gram-positive bacteria, particularly the Arthrobacter as a dominant group in alpine permafrost culturable populations. Results of the Jukes-Cantor evolutionary distance matrix suggested that the vast majority of the isolates were different strains of known species, and three may represent new species within the genus Chryseobacterium of the CFB phylum. From this study, it is proposed that alpine permafrost sediments in the Tianshan Mountains provide a specific ecological niche for prolonging survival of diverse microbial lineages.

UI MeSH Term Description Entries
D010802 Phylogeny The relationships of groups of organisms as reflected by their genetic makeup. Community Phylogenetics,Molecular Phylogenetics,Phylogenetic Analyses,Phylogenetic Analysis,Phylogenetic Clustering,Phylogenetic Comparative Analysis,Phylogenetic Comparative Methods,Phylogenetic Distance,Phylogenetic Generalized Least Squares,Phylogenetic Groups,Phylogenetic Incongruence,Phylogenetic Inference,Phylogenetic Networks,Phylogenetic Reconstruction,Phylogenetic Relatedness,Phylogenetic Relationships,Phylogenetic Signal,Phylogenetic Structure,Phylogenetic Tree,Phylogenetic Trees,Phylogenomics,Analyse, Phylogenetic,Analysis, Phylogenetic,Analysis, Phylogenetic Comparative,Clustering, Phylogenetic,Community Phylogenetic,Comparative Analysis, Phylogenetic,Comparative Method, Phylogenetic,Distance, Phylogenetic,Group, Phylogenetic,Incongruence, Phylogenetic,Inference, Phylogenetic,Method, Phylogenetic Comparative,Molecular Phylogenetic,Network, Phylogenetic,Phylogenetic Analyse,Phylogenetic Clusterings,Phylogenetic Comparative Analyses,Phylogenetic Comparative Method,Phylogenetic Distances,Phylogenetic Group,Phylogenetic Incongruences,Phylogenetic Inferences,Phylogenetic Network,Phylogenetic Reconstructions,Phylogenetic Relatednesses,Phylogenetic Relationship,Phylogenetic Signals,Phylogenetic Structures,Phylogenetic, Community,Phylogenetic, Molecular,Phylogenies,Phylogenomic,Reconstruction, Phylogenetic,Relatedness, Phylogenetic,Relationship, Phylogenetic,Signal, Phylogenetic,Structure, Phylogenetic,Tree, Phylogenetic
D002681 China A country spanning from central Asia to the Pacific Ocean. Inner Mongolia,Manchuria,People's Republic of China,Sinkiang,Mainland China
D003081 Cold Climate A climate characterized by COLD TEMPERATURE for a majority of the time during the year. Polar Regions,Climate, Cold,Climates, Cold,Cold Climates,Polar Region,Region, Polar,Regions, Polar
D003589 Cytophaga A genus of gram-negative gliding bacteria found in SOIL; HUMUS; and FRESHWATER and marine habitats.
D004269 DNA, Bacterial Deoxyribonucleic acid that makes up the genetic material of bacteria. Bacterial DNA
D004275 DNA, Ribosomal DNA sequences encoding RIBOSOMAL RNA and the segments of DNA separating the individual ribosomal RNA genes, referred to as RIBOSOMAL SPACER DNA. Ribosomal DNA,rDNA
D006094 Gram-Positive Bacteria Bacteria which retain the crystal violet stain when treated by Gram's method. Gram Positive Bacteria
D001173 Arthrobacter A genus of asporogenous bacteria isolated from soil that displays a distinctive rod-coccus growth cycle.
D001420 Bacteria, Aerobic Bacteria which require oxygen in order to grow and survive. Aerobic Bacteria
D001482 Base Composition The relative amounts of the PURINES and PYRIMIDINES in a nucleic acid. Base Ratio,G+C Composition,Guanine + Cytosine Composition,G+C Content,GC Composition,GC Content,Guanine + Cytosine Content,Base Compositions,Base Ratios,Composition, Base,Composition, G+C,Composition, GC,Compositions, Base,Compositions, G+C,Compositions, GC,Content, G+C,Content, GC,Contents, G+C,Contents, GC,G+C Compositions,G+C Contents,GC Compositions,GC Contents,Ratio, Base,Ratios, Base

Related Publications

Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
February 2015, Global change biology,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
March 2011, Current microbiology,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
March 2019, Applied microbiology and biotechnology,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
December 2011, Wei sheng wu xue bao = Acta microbiologica Sinica,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
August 2007, Canadian journal of microbiology,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
February 2013, Wei sheng wu xue bao = Acta microbiologica Sinica,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
December 2020, International journal of biometeorology,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
February 2011, Wei sheng wu xue bao = Acta microbiologica Sinica,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
January 2015, Frontiers in microbiology,
Yu Bai, and Daqun Yang, and Jianhui Wang, and Shijian Xu, and Xiaoxiang Wang, and Lizhe An
November 2023, Microorganisms,
Copied contents to your clipboard!