X-ray structure of potato epoxide hydrolase sheds light on substrate specificity in plant enzymes. 2006

Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
Department of Molecular Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden. mowbray@xray.bmc.uu.se

Epoxide hydrolases catalyze the conversion of epoxides to diols. The known functions of such enzymes include detoxification of xenobiotics, drug metabolism, synthesis of signaling compounds, and intermediary metabolism. In plants, epoxide hydrolases are thought to participate in general defense systems. In the present study, we report the first structure of a plant epoxide hydrolase, one of the four homologous enzymes found in potato. The structure was solved by molecular replacement and refined to a resolution of 1.95 A. Analysis of the structure allows a better understanding of the observed substrate specificities and activity. Further, comparisons with mammalian and fungal epoxide hydrolase structures reported earlier show the basis of differing substrate specificities in the various epoxide hydrolase subfamilies. Most plant enzymes, like the potato epoxide hydrolase, are expected to be monomers with a preference for substrates with long lipid-like substituents of the epoxide ring. The significance of these results in the context of biological roles and industrial applications is discussed.

UI MeSH Term Description Entries
D010940 Plant Proteins Proteins found in plants (flowers, herbs, shrubs, trees, etc.). The concept does not include proteins found in vegetables for which PLANT PROTEINS, DIETARY is available. Plant Protein,Protein, Plant,Proteins, Plant
D011198 Solanum tuberosum A plant species of the genus SOLANUM, family SOLANACEAE. The starchy roots are used as food. SOLANINE is found in green parts. Potatoes,Potato,Solanum tuberosums,tuberosum, Solanum,tuberosums, Solanum
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D004851 Epoxide Hydrolases Enzymes that catalyze reversibly the formation of an epoxide or arene oxide from a glycol or aromatic diol, respectively. Epoxide Hydrase,Epoxide Hydrases,Epoxide Hydratase,Epoxide Hydratases,Epoxide Hydrolase,9,10-Epoxypalmitic Acid Hydrase,Microsomal Epoxide Hydrolase,Styrene Epoxide Hydrolase,9,10 Epoxypalmitic Acid Hydrase,Acid Hydrase, 9,10-Epoxypalmitic,Epoxide Hydrolase, Microsomal,Epoxide Hydrolase, Styrene,Hydrase, 9,10-Epoxypalmitic Acid,Hydrase, Epoxide,Hydrases, Epoxide,Hydratase, Epoxide,Hydratases, Epoxide,Hydrolase, Epoxide,Hydrolase, Microsomal Epoxide,Hydrolase, Styrene Epoxide,Hydrolases, Epoxide
D013379 Substrate Specificity A characteristic feature of enzyme activity in relation to the kind of substrate on which the enzyme or catalytic molecule reacts. Specificities, Substrate,Specificity, Substrate,Substrate Specificities
D015394 Molecular Structure The location of the atoms, groups or ions relative to one another in a molecule, as well as the number, type and location of covalent bonds. Structure, Molecular,Molecular Structures,Structures, Molecular
D018360 Crystallography, X-Ray The study of crystal structure using X-RAY DIFFRACTION techniques. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) X-Ray Crystallography,Crystallography, X Ray,Crystallography, Xray,X Ray Crystallography,Xray Crystallography,Crystallographies, X Ray,X Ray Crystallographies

Related Publications

Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
June 2014, Acta crystallographica. Section D, Biological crystallography,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
September 2005, The Biochemical journal,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
December 2020, Journal of chemical information and modeling,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
May 1999, The Journal of biological chemistry,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
June 2016, Organic & biomolecular chemistry,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
November 2017, Carbohydrate research,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
August 1994, The Plant journal : for cell and molecular biology,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
January 1989, Biochemical pharmacology,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
July 2010, Chembiochem : a European journal of chemical biology,
Sherry L Mowbray, and Lisa T Elfström, and Kerstin M Ahlgren, and C Evalena Andersson, and Mikael Widersten
July 2000, Structure (London, England : 1993),
Copied contents to your clipboard!