Trypanosoma brucei UDP-galactose-4'-epimerase in ternary complex with NAD+ and the substrate analogue UDP-4-deoxy-4-fluoro-alpha-D-galactose. 2006

Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
Division of Biological Chemistry and Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland.

The structure of the NAD-dependent oxidoreductase UDP-galactose-4'-epimerase from Trypanosoma brucei in complex with cofactor and the substrate analogue UDP-4-deoxy-4-fluoro-alpha-D-galactose has been determined using diffraction data to 2.7 A resolution. Despite the high level of sequence and structure conservation between the trypanosomatid enzyme and those from humans, yeast and bacteria, the binding of the 4-fluoro-alpha-D-galactose moiety is distinct from previously reported structures. Of particular note is the observation that when bound to the T. brucei enzyme, the galactose moiety of this fluoro-derivative is rotated approximately 180 degrees with respect to the orientation of the hexose component of UDP-glucose when in complex with the human enzyme. The architecture of the catalytic centre is designed to effectively bind different orientations of the hexose, a finding that is consistent with a mechanism that requires the sugar to maintain a degree of flexibility within the active site.

UI MeSH Term Description Entries
D009243 NAD A coenzyme composed of ribosylnicotinamide 5'-diphosphate coupled to adenosine 5'-phosphate by pyrophosphate linkage. It is found widely in nature and is involved in numerous enzymatic reactions in which it serves as an electron carrier by being alternately oxidized (NAD+) and reduced (NADH). (Dorland, 27th ed) Coenzyme I,DPN,Diphosphopyridine Nucleotide,Nadide,Nicotinamide-Adenine Dinucleotide,Dihydronicotinamide Adenine Dinucleotide,NADH,Adenine Dinucleotide, Dihydronicotinamide,Dinucleotide, Dihydronicotinamide Adenine,Dinucleotide, Nicotinamide-Adenine,Nicotinamide Adenine Dinucleotide,Nucleotide, Diphosphopyridine
D000818 Animals Unicellular or multicellular, heterotrophic organisms, that have sensation and the power of voluntary movement. Under the older five kingdom paradigm, Animalia was one of the kingdoms. Under the modern three domain model, Animalia represents one of the many groups in the domain EUKARYOTA. Animal,Metazoa,Animalia
D013379 Substrate Specificity A characteristic feature of enzyme activity in relation to the kind of substrate on which the enzyme or catalytic molecule reacts. Specificities, Substrate,Specificity, Substrate,Substrate Specificities
D014346 Trypanosoma brucei brucei A hemoflagellate subspecies of parasitic protozoa that causes nagana in domestic and game animals in Africa. It apparently does not infect humans. It is transmitted by bites of tsetse flies (Glossina). Trypanosoma brucei,Trypanosoma brucei bruceus,Trypanosoma bruceus,brucei brucei, Trypanosoma,brucei, Trypanosoma brucei,bruceus, Trypanosoma,bruceus, Trypanosoma brucei
D014531 Uridine Diphosphate Galactose A nucleoside diphosphate sugar which can be epimerized into UDPglucose for entry into the mainstream of carbohydrate metabolism. Serves as a source of galactose in the synthesis of lipopolysaccharides, cerebrosides, and lactose. UDP Galactose,UDPGal,Uridine Diphosphogalactose,Uridine Pyrophosphogalactose,Diphosphate Galactose, Uridine,Diphosphogalactose, Uridine,Galactose, UDP,Galactose, Uridine Diphosphate,Pyrophosphogalactose, Uridine
D014534 UDPglucose 4-Epimerase A necessary enzyme in the metabolism of galactose. It reversibly catalyzes the conversion of UDPglucose to UDPgalactose. NAD+ is an essential component for enzymatic activity. EC 5.1.3.2. UDP Galactose Epimerase,UDP Glucose Epimerase,UDPgalactose 4-Epimerase,Uridine Diphosphate Glucose Epimerase,UDP-Galactose 4-Epimerase,UDP-Glucose 4-Epimerase,4-Epimerase, UDP-Galactose,4-Epimerase, UDP-Glucose,4-Epimerase, UDPgalactose,4-Epimerase, UDPglucose,Epimerase, UDP Galactose,Epimerase, UDP Glucose,Galactose Epimerase, UDP,Glucose Epimerase, UDP,UDP Galactose 4 Epimerase,UDP Glucose 4 Epimerase,UDPgalactose 4 Epimerase,UDPglucose 4 Epimerase
D017433 Protein Structure, Secondary The level of protein structure in which regular hydrogen-bond interactions within contiguous stretches of polypeptide chain give rise to ALPHA-HELICES; BETA-STRANDS (which align to form BETA-SHEETS), or other types of coils. This is the first folding level of protein conformation. Secondary Protein Structure,Protein Structures, Secondary,Secondary Protein Structures,Structure, Secondary Protein,Structures, Secondary Protein
D018360 Crystallography, X-Ray The study of crystal structure using X-RAY DIFFRACTION techniques. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) X-Ray Crystallography,Crystallography, X Ray,Crystallography, Xray,X Ray Crystallography,Xray Crystallography,Crystallographies, X Ray,X Ray Crystallographies
D020134 Catalytic Domain The region of an enzyme that interacts with its substrate to cause the enzymatic reaction. Active Site,Catalytic Core,Catalytic Region,Catalytic Site,Catalytic Subunit,Reactive Site,Active Sites,Catalytic Cores,Catalytic Domains,Catalytic Regions,Catalytic Sites,Catalytic Subunits,Core, Catalytic,Cores, Catalytic,Domain, Catalytic,Domains, Catalytic,Reactive Sites,Region, Catalytic,Regions, Catalytic,Site, Active,Site, Catalytic,Site, Reactive,Sites, Active,Sites, Catalytic,Sites, Reactive,Subunit, Catalytic,Subunits, Catalytic

Related Publications

Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
October 2000, Carbohydrate research,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
November 2006, Eukaryotic cell,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
June 1996, Biochemistry,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
August 2012, Chemical biology & drug design,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
January 1998, Ryoikibetsu shokogun shirizu,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
January 2013, PloS one,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
April 1971, Carbohydrate research,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
July 2004, The Journal of biological chemistry,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
November 1982, Clinical chemistry,
Magnus S Alphey, and Andrew Burton, and Michael D Urbaniak, and Geert-Jan Boons, and Michael A J Ferguson, and William N Hunter
May 1976, Analytical biochemistry,
Copied contents to your clipboard!