Dynamics of single-stranded DNA in polyacrylamide gels during pulsed field gel electrophoresis. A birefringence study. 1996

J Sturm, and A Pluen, and G Weill
Institut Charles Sadron, CNRS and Université Louis Pasteur, 6 rue Boussingault F-67083 Strasbourg Cedex, France.

The study of the orientation of single-stranded DNA in polyacrylamide gels in denaturing conditions has been undertaken by electric birefringence in order to determine the mechanism involved in the electrophoretic transport. The presence of an overshoot in the birefringence signal, when applying the electric field, and the study of the influences of the electric field and of the gel concentration on the dynamics show that a mechanism of reptation with elongation of the molecule occurs in polyacrylamide gels with low T values. Therefore it is suggested that the use of pulsed fields in sequencing electrophoresis is possible and can lead to a large increase of the length of the fragments that can be sequenced in one single run.

UI MeSH Term Description Entries

Related Publications

J Sturm, and A Pluen, and G Weill
May 1990, Physical review letters,
J Sturm, and A Pluen, and G Weill
January 1993, Applied and theoretical electrophoresis : the official journal of the International Electrophoresis Society,
J Sturm, and A Pluen, and G Weill
May 1992, Nucleic acids research,
J Sturm, and A Pluen, and G Weill
June 2006, CSH protocols,
J Sturm, and A Pluen, and G Weill
April 1993, Electrophoresis,
J Sturm, and A Pluen, and G Weill
June 2006, CSH protocols,
Copied contents to your clipboard!