The translational fidelity function of IF3 during transition from the 30 S initiation complex to the 70 S initiation complex. 2007

Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104, USA.

IF3 has a fidelity function in the initiation of translation, inducing the dissociation of fMet-tRNA(fMet) from the 30 S initiation complexes (30SIC) containing a non-canonical initiation triplet (e.g. AUU) in place of a canonical initiation triplet (e.g., AUG). IF2 has a complementary role, selectively promoting initiator tRNA binding to the ribosome. Here, we used parallel rapid kinetics measurements of GTP hydrolysis, Pi release, light-scattering, and changes in intensities of fluorophore-labeled IF2 and fMet-tRNA(fMet) to determine the effects on both 30SIC formation and 30SIC conversion to 70 S initiation complexes (70SIC) of (a) substituting AUG with AUU, and/or (b) omitting IF3, and/or (c) replacing GTP with the non-hydrolyzable analog GDPCP. We demonstrate that the presence or absence of IF3 has, at most, minor effects on the rate of 30SIC formation using either AUG or AUU as the initiation codon, and conclude that the high affinity of IF2 for both 30 S subunit and initiator tRNA overrides any perturbation of the codon-anticodon interaction resulting from AUU for AUG substitution. In contrast, replacement of AUG by AUU leads to a dramatic reduction in the rate of 70SIC formation from 30SIC upon addition of 50 S subunits. Interpreting our results in the framework of a quantitative kinetic scheme leads to the conclusion that, within the overall process of 70SIC formation, the step most affected by substituting AUU for AUG involves the conversion of an initially labile 70 S ribosome into a more stable complex. In the absence of IF3, the difference between AUG and AUU largely disappears, with each initiation codon affording rapid 70SIC formation, leading to the hypothesis that it is the rate of IF3 dissociation from the 70 S ribosome during IC70S formation that is critical to its fidelity function.

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D010442 Peptide Chain Initiation, Translational A process of GENETIC TRANSLATION whereby the formation of a peptide chain is started. It includes assembly of the RIBOSOME components, the MESSENGER RNA coding for the polypeptide to be made, INITIATOR TRNA, and PEPTIDE INITIATION FACTORS; and placement of the first amino acid in the peptide chain. The details and components of this process are unique for prokaryotic protein biosynthesis and eukaryotic protein biosynthesis. Chain Initiation, Peptide, Translational,Protein Biosynthesis Initiation,Protein Chain Initiation, Translational,Protein Translation Initiation,Translation Initiation, Genetic,Translation Initiation, Protein,Translational Initiation, Protein,Translational Peptide Chain Initiation,Biosynthesis Initiation, Protein,Genetic Translation Initiation,Initiation, Genetic Translation,Initiation, Protein Biosynthesis,Initiation, Protein Translation,Initiation, Protein Translational,Protein Translational Initiation
D003062 Codon A set of three nucleotides in a protein coding sequence that specifies individual amino acids or a termination signal (CODON, TERMINATOR). Most codons are universal, but some organisms do not produce the transfer RNAs (RNA, TRANSFER) complementary to all codons. These codons are referred to as unassigned codons (CODONS, NONSENSE). Codon, Sense,Sense Codon,Codons,Codons, Sense,Sense Codons
D004151 Dipeptides Peptides composed of two amino acid units. Dipeptide
D012270 Ribosomes Multicomponent ribonucleoprotein structures found in the CYTOPLASM of all cells, and in MITOCHONDRIA, and PLASTIDS. They function in PROTEIN BIOSYNTHESIS via GENETIC TRANSLATION. Ribosome
D012333 RNA, Messenger RNA sequences that serve as templates for protein synthesis. Bacterial mRNAs are generally primary transcripts in that they do not require post-transcriptional processing. Eukaryotic mRNA is synthesized in the nucleus and must be exported to the cytoplasm for translation. Most eukaryotic mRNAs have a sequence of polyadenylic acid at the 3' end, referred to as the poly(A) tail. The function of this tail is not known for certain, but it may play a role in the export of mature mRNA from the nucleus as well as in helping stabilize some mRNA molecules by retarding their degradation in the cytoplasm. Messenger RNA,Messenger RNA, Polyadenylated,Poly(A) Tail,Poly(A)+ RNA,Poly(A)+ mRNA,RNA, Messenger, Polyadenylated,RNA, Polyadenylated,mRNA,mRNA, Non-Polyadenylated,mRNA, Polyadenylated,Non-Polyadenylated mRNA,Poly(A) RNA,Polyadenylated mRNA,Non Polyadenylated mRNA,Polyadenylated Messenger RNA,Polyadenylated RNA,RNA, Polyadenylated Messenger,mRNA, Non Polyadenylated
D012346 RNA, Transfer, Amino Acyl Intermediates in protein biosynthesis. The compounds are formed from amino acids, ATP and transfer RNA, a reaction catalyzed by aminoacyl tRNA synthetase. They are key compounds in the genetic translation process. Amino Acyl tRNA,Transfer RNA, Amino Acyl,tRNA-Amino Acyl,Amino Acyl T RNA,Acyl tRNA, Amino,Acyl, tRNA-Amino,tRNA Amino Acyl,tRNA, Amino Acyl
D012358 RNA, Transfer, Met A transfer RNA which is specific for carrying methionine to sites on the ribosomes. During initiation of protein synthesis, tRNA(f)Met in prokaryotic cells and tRNA(i)Met in eukaryotic cells binds to the start codon (CODON, INITIATOR). Initiator tRNA,Methionine-Specific tRNA,Methionine-Specific tRNAm,RNA, Transfer, Initiator,Transfer RNA, Met,tRNA(f)Met,tRNA(i)Met,tRNA(m)Met,tRNAMet,tRNA(Met),Met Transfer RNA,Methionine Specific tRNA,Methionine Specific tRNAm,RNA, Met Transfer,tRNA, Initiator,tRNA, Methionine-Specific,tRNAm, Methionine-Specific
D020558 GTP Phosphohydrolases Enzymes that hydrolyze GTP to GDP. EC 3.6.1.-. GTPase,GTPases,Guanosine Triphosphate Phosphohydrolases,Guanosinetriphosphatases,GTP Phosphohydrolase,Phosphohydrolase, GTP,Phosphohydrolases, GTP,Phosphohydrolases, Guanosine Triphosphate,Triphosphate Phosphohydrolases, Guanosine
D039665 Prokaryotic Initiation Factor-3 A prokaryotic initiation factor that plays a role in recycling of ribosomal subunits for a new round of translational initiation. It binds to 16S RIBOSOMAL RNA and stimulates the dissociation of vacant 70S ribosomes. It may also be involved in the preferential binding of initiator tRNA to the 30S initiation complex. Peptide Initiation Factor IF-3,Initiation Factor IF-3,Peptide Initiation Factor 3,Prokaryotic Peptide Initiation Factor-3,TIF IF3,Translation Initiation Factor 3,IF-3, Initiation Factor,Initiation Factor IF 3,Initiation Factor-3, Prokaryotic,Peptide Initiation Factor IF 3,Prokaryotic Initiation Factor 3,Prokaryotic Peptide Initiation Factor 3

Related Publications

Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
January 1986, FEBS letters,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
September 1976, Biochemical and biophysical research communications,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
August 1976, Journal of molecular biology,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
March 1978, FEBS letters,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
November 1984, Proceedings of the National Academy of Sciences of the United States of America,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
January 2006, The EMBO journal,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
April 1999, Proceedings of the National Academy of Sciences of the United States of America,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
January 1979, Methods in enzymology,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
April 1994, Protein expression and purification,
Christina Grigoriadou, and Stefano Marzi, and Dongli Pan, and Claudio O Gualerzi, and Barry S Cooperman
June 1978, FEBS letters,
Copied contents to your clipboard!