Quantitative trait loci mapping in an F2 Duroc x Pietrain resource population: I. Growth traits. 2008

D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
Department of Animal Science, Michigan State University, East Lansing, MI 48824, USA.

Pigs from the F(2) generation of a Duroc x Pietrain resource population were evaluated to discover QTL affecting growth and composition traits. Body weight and ultrasound estimates of 10th-rib backfat, last-rib backfat, and LM area were serially measured throughout development. Estimates of fat-free total lean, total body fat, empty body protein, empty body lipid, and ADG from 10 to 22 wk of age were calculated, and random regression analyses were performed to estimate individual animal phenotypes representing intercept and linear rates of increase in these serial traits. A total of 510 F(2) animals were genotyped for 124 micro-satellite markers evenly spaced across the genome. Data were analyzed with line cross, least squares regression, interval mapping methods using sex and litter as fixed effects. Significance thresholds of the F-statistic for single QTL with additive, dominance, or imprinted effects were determined at the chromosome- and genome-wise levels by permutation tests. A total of 43 QTL for 22 of the 29 measured traits were found to be significant at the 5% chromosome-wise level. Of these 43 QTL, 20 were significant at the 1% chromosome-wise significance threshold, 14 of these 20 were also significant at the 5% genome-wise significance threshold, and 10 of these 14 were also significant at the 1% genome-wise significance threshold. A total of 22 QTL for the animal random regression terms were found to be significant at the 5% chromosome-wise level. Of these 22 QTL, 6 were significant at the 1% chromosome-wise significance threshold, 4 of these 6 were also significant at the 5% genome-wise significance threshold, and 3 of these 4 were also significant at the 1% genome-wise significance threshold. Putative QTL were discovered for 10th-rib and last-rib backfat on SSC 6, body composition traits on SSC 9, backfat and lipid composition traits on SSC 11, 10th-rib backfat and total body fat tissue on SSC 12, and linear regression of last-rib backfat and total body fat tissue on SSC 8. These results will facilitate fine-mapping efforts to identify genes controlling growth and body composition of pigs that can be incorporated into marker-assisted selection programs to accelerate genetic improvement in pig populations.

UI MeSH Term Description Entries
D008297 Male Males
D012044 Regression Analysis Procedures for finding the mathematical function which best describes the relationship between a dependent variable and one or more independent variables. In linear regression (see LINEAR MODELS) the relationship is constrained to be a straight line and LEAST-SQUARES ANALYSIS is used to determine the best fit. In logistic regression (see LOGISTIC MODELS) the dependent variable is qualitative rather than continuously variable and LIKELIHOOD FUNCTIONS are used to find the best relationship. In multiple regression, the dependent variable is considered to depend on more than a single independent variable. Regression Diagnostics,Statistical Regression,Analysis, Regression,Analyses, Regression,Diagnostics, Regression,Regression Analyses,Regression, Statistical,Regressions, Statistical,Statistical Regressions
D001823 Body Composition The relative amounts of various components in the body, such as percentage of body fat. Body Compositions,Composition, Body,Compositions, Body
D001835 Body Weight The mass or quantity of heaviness of an individual. It is expressed by units of pounds or kilograms. Body Weights,Weight, Body,Weights, Body
D001947 Breeding The production of offspring by selective mating or HYBRIDIZATION, GENETIC in animals or plants. Breedings
D002874 Chromosome Mapping Any method used for determining the location of and relative distances between genes on a chromosome. Gene Mapping,Linkage Mapping,Genome Mapping,Chromosome Mappings,Gene Mappings,Genome Mappings,Linkage Mappings,Mapping, Chromosome,Mapping, Gene,Mapping, Genome,Mapping, Linkage,Mappings, Chromosome,Mappings, Gene,Mappings, Genome,Mappings, Linkage
D003433 Crosses, Genetic Deliberate breeding of two different individuals that results in offspring that carry part of the genetic material of each parent. The parent organisms must be genetically compatible and may be from different varieties or closely related species. Cross, Genetic,Genetic Cross,Genetic Crosses
D005260 Female Females
D006128 Growth Gradual increase in the number, the size, and the complexity of cells of an individual. Growth generally results in increase in ORGAN WEIGHT; BODY WEIGHT; and BODY HEIGHT.
D000273 Adipose Tissue Specialized connective tissue composed of fat cells (ADIPOCYTES). It is the site of stored FATS, usually in the form of TRIGLYCERIDES. In mammals, there are two types of adipose tissue, the WHITE FAT and the BROWN FAT. Their relative distributions vary in different species with most adipose tissue being white. Fatty Tissue,Body Fat,Fat Pad,Fat Pads,Pad, Fat,Pads, Fat,Tissue, Adipose,Tissue, Fatty

Related Publications

D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
December 2003, Journal of animal science,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
November 2010, BMC genetics,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
March 2011, Genetics, selection, evolution : GSE,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
August 2010, Mammalian genome : official journal of the International Mammalian Genome Society,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
February 2017, Journal of animal science,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
November 2006, Journal of animal science,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
September 2008, Mammalian genome : official journal of the International Mammalian Genome Society,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
November 2009, Journal of animal science,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
August 2009, Animal genetics,
D B Edwards, and C W Ernst, and R J Tempelman, and G J M Rosa, and N E Raney, and M D Hoge, and R O Bates
January 2009, Journal of animal science,
Copied contents to your clipboard!