Metal binding induces conversion of B- to the hybrid B-Z-form in natural DNA. 2008

Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
Department of Microbiology, Kazan State University, Kremliovskaya st. 18, Kazan 420008, Russia. Maria.Filimonova@ksu.ru

Highly polymerized herring testis DNA of the random nucleotide sequence has been studied in solution by circular dichroism and ultra-violet absorption spectrometry under various experimental conditions. At low temperature upon addition of 0.05 M NaCl or 1.15 M MgSO4 the DNA formed a helix that belonged to the B-family. As the temperature was increased a transition from the pure B- to the hybrid B-Z-form occurred in the presence of 1.15 M MgSO4. This transition occurred over a large range of temperatures and corresponded to a non-cooperative conformational change. A similar DNA transition was induced with 0.098 mM Co(NH3)6Cl3. However, in the presence of 5.3 M NaCl the DNA conformation was not similar to that observed in 1.15 M MgSO4 or 0.098 mM Co(NH3)6Cl3 independently on the environmental temperature. In 5.3 M NaCl the DNA is thought to undergo a transition from one to another right-handed conformation that could be intermediate partially dehydrated conformer arising on the first step in the sequential transition to the dehydration of the polynucleotide. Our results show that a realistic model of native DNA, bearing Z-tracts embedded in B-helixes, can be obtained upon binding of alkaline earth or transition metals.

UI MeSH Term Description Entries
D008274 Magnesium A metallic element that has the atomic symbol Mg, atomic number 12, and atomic weight 24.31. It is important for the activity of many enzymes, especially those involved in OXIDATIVE PHOSPHORYLATION.
D008297 Male Males
D008670 Metals Electropositive chemical elements characterized by ductility, malleability, luster, and conductance of heat and electricity. They can replace the hydrogen of an acid and form bases with hydroxyl radicals. (Grant & Hackh's Chemical Dictionary, 5th ed) Metal
D009690 Nucleic Acid Conformation The spatial arrangement of the atoms of a nucleic acid or polynucleotide that results in its characteristic 3-dimensional shape. DNA Conformation,RNA Conformation,Conformation, DNA,Conformation, Nucleic Acid,Conformation, RNA,Conformations, DNA,Conformations, Nucleic Acid,Conformations, RNA,DNA Conformations,Nucleic Acid Conformations,RNA Conformations
D009691 Nucleic Acid Denaturation Disruption of the secondary structure of nucleic acids by heat, extreme pH or chemical treatment. Double strand DNA is "melted" by dissociation of the non-covalent hydrogen bonds and hydrophobic interactions. Denatured DNA appears to be a single-stranded flexible structure. The effects of denaturation on RNA are similar though less pronounced and largely reversible. DNA Denaturation,DNA Melting,RNA Denaturation,Acid Denaturation, Nucleic,Denaturation, DNA,Denaturation, Nucleic Acid,Denaturation, RNA,Nucleic Acid Denaturations
D002942 Circular Dichroism A change from planar to elliptic polarization when an initially plane-polarized light wave traverses an optically active medium. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) Circular Dichroism, Vibrational,Dichroism, Circular,Vibrational Circular Dichroism
D003035 Cobalt A trace element that is a component of vitamin B12. It has the atomic symbol Co, atomic number 27, and atomic weight 58.93. It is used in nuclear weapons, alloys, and pigments. Deficiency in animals leads to anemia; its excess in humans can lead to erythrocytosis. Cobalt-59,Cobalt 59
D004247 DNA A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine). DNA, Double-Stranded,Deoxyribonucleic Acid,ds-DNA,DNA, Double Stranded,Double-Stranded DNA,ds DNA
D005399 Fishes A group of cold-blooded, aquatic vertebrates having gills, fins, a cartilaginous or bony endoskeleton, and elongated bodies covered with scales.
D000042 Absorption The physical or physiological processes by which substances, tissue, cells, etc. take up or take in other substances or energy.

Related Publications

Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
November 1994, International journal of radiation biology,
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
March 1983, Science (New York, N.Y.),
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
April 1983, Nucleic acids research,
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
November 2001, Archives of biochemistry and biophysics,
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
December 1988, Indian journal of biochemistry & biophysics,
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
January 2017, Biochemical and biophysical research communications,
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
October 2018, Molecules (Basel, Switzerland),
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
January 2001, Indian journal of biochemistry & biophysics,
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
April 2018, International journal of molecular sciences,
Maria Filimonova, and Valentina Gubskaya, and Rustem Davidov, and Alexander Garusov, and Il'dus Nuretdinov
April 2021, Nucleic acids research,
Copied contents to your clipboard!