-transparent.png){kind=logo}
SnoopCGH: software for visualizing comparative genomic hybridization data. 2009
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
Wellcome Trust Sanger Institute, Hinxton, The Weatherall Institute of Molecular Medicine and Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK. jg10@sanger.ac.uk
Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data. METHODS SnoopCGH is written in java and is available from http://snoopcgh.sourceforge.net/
Related Publications
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
October 2007,
Gene regulation and systems biology,
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
February 2004,
BMC bioinformatics,
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
January 1995,
Cytometry,
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
February 2017,
Genome biology,
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
November 2008,
Cancer investigation,
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
January 2009,
Methods in molecular biology (Clifton, N.J.),
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
May 2001,
Current protocols in human genetics,
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
January 1996,
Methods in molecular medicine,
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
January 2005,
Annual review of genomics and human genetics,
Jacob Almagro-Garcia, and
Magnus Manske, and
Celine Carret, and
Susana Campino, and
Sarah Auburn, and
Bronwyn L Macinnis, and
Gareth Maslen, and
Arnab Pain, and
Christopher I Newbold, and
Dominic P Kwiatkowski, and
Taane G Clark
January 2001,
Methods in molecular medicine,
