Genetic diversity and classification of the outer capsid glycoprotein VP7 of porcine group B rotaviruses. 2009

Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
Research Team for Viral Diseases, National Institute of Animal Health, Tsukuba, Ibaraki, 3050856, Japan.

We determined the nucleotide sequences of the outer capsid glycoprotein (VP7) genes of 38 porcine group B rotaviruses (GBRs) from feces of pigs at 27 farms in Japan between 2000 and 2007. Substantial diversity among porcine GBR VP7 genes was observed, with up to 42.4% difference in nucleotides and 49.8% in amino acids. On comparison of VP7 genes, porcine GBRs were clearly distinct from the published corresponding genes from human, bovine and murine GBRs (53.7-70.8% identity in nucleotides and 45.8-73.4% identity in amino acids). Phylogenetic analysis showed that the VP7s of GBRs could be divided into five genotypes: the murine strain was genotype 1, human strains were genotype 2, bovine and some porcine strains were genotype 3, and other porcine strains belonged to genotype 4 or 5. In addition, GBR VP7s in genotypes 3 and 5 were further divided into four and five clusters, respectively. No relationship between VP7 genotype and double-stranded RNA migration patterns of porcine GBRs in polyacrylamide gel electrophoresis were observed. However, an antigen enzyme-linked immunosorbent assay using antiserum to recombinant bovine GBR VP6 did not react with fecal samples containing one cluster of genotype 5 of porcine GBRs. The abundant divergence of porcine GBR VP7 genes suggests that porcine species might be an original natural host of GBR infection and that different serotypes might exist among porcine GBRs. To our knowledge, this is the first report to describe the gene sequences and typing of porcine GBR VP7s.

UI MeSH Term Description Entries
D010802 Phylogeny The relationships of groups of organisms as reflected by their genetic makeup. Community Phylogenetics,Molecular Phylogenetics,Phylogenetic Analyses,Phylogenetic Analysis,Phylogenetic Clustering,Phylogenetic Comparative Analysis,Phylogenetic Comparative Methods,Phylogenetic Distance,Phylogenetic Generalized Least Squares,Phylogenetic Groups,Phylogenetic Incongruence,Phylogenetic Inference,Phylogenetic Networks,Phylogenetic Reconstruction,Phylogenetic Relatedness,Phylogenetic Relationships,Phylogenetic Signal,Phylogenetic Structure,Phylogenetic Tree,Phylogenetic Trees,Phylogenomics,Analyse, Phylogenetic,Analysis, Phylogenetic,Analysis, Phylogenetic Comparative,Clustering, Phylogenetic,Community Phylogenetic,Comparative Analysis, Phylogenetic,Comparative Method, Phylogenetic,Distance, Phylogenetic,Group, Phylogenetic,Incongruence, Phylogenetic,Inference, Phylogenetic,Method, Phylogenetic Comparative,Molecular Phylogenetic,Network, Phylogenetic,Phylogenetic Analyse,Phylogenetic Clusterings,Phylogenetic Comparative Analyses,Phylogenetic Comparative Method,Phylogenetic Distances,Phylogenetic Group,Phylogenetic Incongruences,Phylogenetic Inferences,Phylogenetic Network,Phylogenetic Reconstructions,Phylogenetic Relatednesses,Phylogenetic Relationship,Phylogenetic Signals,Phylogenetic Structures,Phylogenetic, Community,Phylogenetic, Molecular,Phylogenies,Phylogenomic,Reconstruction, Phylogenetic,Relatedness, Phylogenetic,Relationship, Phylogenetic,Signal, Phylogenetic,Structure, Phylogenetic,Tree, Phylogenetic
D002417 Cattle Domesticated bovine animals of the genus Bos, usually kept on a farm or ranch and used for the production of meat or dairy products or for heavy labor. Beef Cow,Bos grunniens,Bos indicus,Bos indicus Cattle,Bos taurus,Cow,Cow, Domestic,Dairy Cow,Holstein Cow,Indicine Cattle,Taurine Cattle,Taurus Cattle,Yak,Zebu,Beef Cows,Bos indicus Cattles,Cattle, Bos indicus,Cattle, Indicine,Cattle, Taurine,Cattle, Taurus,Cattles, Bos indicus,Cattles, Indicine,Cattles, Taurine,Cattles, Taurus,Cow, Beef,Cow, Dairy,Cow, Holstein,Cows,Dairy Cows,Domestic Cow,Domestic Cows,Indicine Cattles,Taurine Cattles,Taurus Cattles,Yaks,Zebus
D005838 Genotype The genetic constitution of the individual, comprising the ALLELES present at each GENETIC LOCUS. Genogroup,Genogroups,Genotypes
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D000818 Animals Unicellular or multicellular, heterotrophic organisms, that have sensation and the power of voluntary movement. Under the older five kingdom paradigm, Animalia was one of the kingdoms. Under the modern three domain model, Animalia represents one of the many groups in the domain EUKARYOTA. Animal,Metazoa,Animalia
D000956 Antigens, Viral Substances elaborated by viruses that have antigenic activity. Viral Antigen,Viral Antigens,Antigen, Viral
D012401 Rotavirus A genus of REOVIRIDAE, causing acute gastroenteritis in BIRDS and MAMMALS, including humans. Transmission is horizontal and by environmental contamination. Seven species (Rotaviruses A thru G) are recognized. Neonatal Calf Diarrhea Virus,Rotaviruses
D013552 Swine Any of various animals that constitute the family Suidae and comprise stout-bodied, short-legged omnivorous mammals with thick skin, usually covered with coarse bristles, a rather long mobile snout, and small tail. Included are the genera Babyrousa, Phacochoerus (wart hogs), and Sus, the latter containing the domestic pig (see SUS SCROFA). Phacochoerus,Pigs,Suidae,Warthogs,Wart Hogs,Hog, Wart,Hogs, Wart,Wart Hog
D013553 Swine Diseases Diseases of domestic swine and of the wild boar of the genus Sus. Disease, Swine,Diseases, Swine,Swine Disease
D014644 Genetic Variation Genotypic differences observed among individuals in a population. Genetic Diversity,Variation, Genetic,Diversity, Genetic,Diversities, Genetic,Genetic Diversities,Genetic Variations,Variations, Genetic

Related Publications

Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
January 1996, Archives of virology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
March 2015, Veterinary microbiology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
September 1991, Virology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
October 1994, Journal of medical virology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
October 2007, Virology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
July 2004, Journal of virology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
April 1988, The Journal of general virology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
January 1996, Archives of virology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
July 2002, Journal of virology,
Kazufumi Kuga, and Ayako Miyazaki, and Takako Suzuki, and Michihiro Takagi, and Nachiko Hattori, and Ken Katsuda, and Masaji Mase, and Makoto Sugiyama, and Hiroshi Tsunemitsu
January 1995, Archives of virology,
Copied contents to your clipboard!