Mechanism of inhibition of HIV-1 reverse transcriptase by 4'-Ethynyl-2-fluoro-2'-deoxyadenosine triphosphate, a translocation-defective reverse transcriptase inhibitor. 2009

Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
Christopher Bond Life Sciences Center, Department of Molecular Microbiology and Immunology, University of Missouri, Columbia, Missouri 65211, USA.

Nucleoside reverse transcriptase inhibitors (NRTIs) are employed in first line therapies for the treatment of human immunodeficiency virus (HIV) infection. They generally lack a 3'-hydroxyl group, and thus when incorporated into the nascent DNA they prevent further elongation. In this report we show that 4'-ethynyl-2-fluoro-2'-deoxyadenosine (EFdA), a nucleoside analog that retains a 3'-hydroxyl moiety, inhibited HIV-1 replication in activated peripheral blood mononuclear cells with an EC(50) of 0.05 nm, a potency several orders of magnitude better than any of the current clinically used NRTIs. This exceptional antiviral activity stems in part from a mechanism of action that is different from approved NRTIs. Reverse transcriptase (RT) can use EFdA-5'-triphosphate (EFdA-TP) as a substrate more efficiently than the natural substrate, dATP. Importantly, despite the presence of a 3'-hydroxyl, the incorporated EFdA monophosphate (EFdA-MP) acted mainly as a de facto terminator of further RT-catalyzed DNA synthesis because of the difficulty of RT translocation on the nucleic acid primer possessing 3'-terminal EFdA-MP. EFdA-TP is thus a translocation-defective RT inhibitor (TDRTI). This diminished translocation kept the primer 3'-terminal EFdA-MP ideally located to undergo phosphorolytic excision. However, net phosphorolysis was not substantially increased, because of the apparently facile reincorporation of the newly excised EFdA-TP. Our molecular modeling studies suggest that the 4'-ethynyl fits into a hydrophobic pocket defined by RT residues Ala-114, Tyr-115, Phe-160, and Met-184 and the aliphatic chain of Asp-185. These interactions, which contribute to both enhanced RT utilization of EFdA-TP and difficulty in the translocation of 3'-terminal EFdA-MP primers, underlie the mechanism of action of this potent antiviral nucleoside.

UI MeSH Term Description Entries
D007963 Leukocytes, Mononuclear Mature LYMPHOCYTES and MONOCYTES transported by the blood to the body's extravascular space. They are morphologically distinguishable from mature granulocytic leukocytes by their large, non-lobed nuclei and lack of coarse, heavily stained cytoplasmic granules. Mononuclear Leukocyte,Mononuclear Leukocytes,PBMC Peripheral Blood Mononuclear Cells,Peripheral Blood Human Mononuclear Cells,Peripheral Blood Mononuclear Cell,Peripheral Blood Mononuclear Cells,Leukocyte, Mononuclear
D008958 Models, Molecular Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures. Molecular Models,Model, Molecular,Molecular Model
D003838 Deoxyadenine Nucleotides Adenine nucleotides which contain deoxyribose as the sugar moiety. Deoxyadenosine Phosphates,Nucleotides, Deoxyadenine,Phosphates, Deoxyadenosine
D004279 DNA, Viral Deoxyribonucleic acid that makes up the genetic material of viruses. Viral DNA
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D014779 Virus Replication The process of intracellular viral multiplication, consisting of the synthesis of PROTEINS; NUCLEIC ACIDS; and sometimes LIPIDS, and their assembly into a new infectious particle. Viral Replication,Replication, Viral,Replication, Virus,Replications, Viral,Replications, Virus,Viral Replications,Virus Replications
D015497 HIV-1 The type species of LENTIVIRUS and the etiologic agent of AIDS. It is characterized by its cytopathic effect and affinity for the T4-lymphocyte. Human immunodeficiency virus 1,HIV-I,Human Immunodeficiency Virus Type 1,Immunodeficiency Virus Type 1, Human
D015658 HIV Infections Includes the spectrum of human immunodeficiency virus infections that range from asymptomatic seropositivity, thru AIDS-related complex (ARC), to acquired immunodeficiency syndrome (AIDS). HTLV-III Infections,HTLV-III-LAV Infections,T-Lymphotropic Virus Type III Infections, Human,HIV Coinfection,Coinfection, HIV,Coinfections, HIV,HIV Coinfections,HIV Infection,HTLV III Infections,HTLV III LAV Infections,HTLV-III Infection,HTLV-III-LAV Infection,Infection, HIV,Infection, HTLV-III,Infection, HTLV-III-LAV,Infections, HIV,Infections, HTLV-III,Infections, HTLV-III-LAV,T Lymphotropic Virus Type III Infections, Human
D017433 Protein Structure, Secondary The level of protein structure in which regular hydrogen-bond interactions within contiguous stretches of polypeptide chain give rise to ALPHA-HELICES; BETA-STRANDS (which align to form BETA-SHEETS), or other types of coils. This is the first folding level of protein conformation. Secondary Protein Structure,Protein Structures, Secondary,Secondary Protein Structures,Structure, Secondary Protein,Structures, Secondary Protein
D048348 Reverse Transcription The biosynthesis of DNA carried out on a template of RNA. Transcription, Reverse

Related Publications

Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
July 2018, Current opinion in HIV and AIDS,
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
June 2014, Antiviral research,
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
October 2018, Journal of medicinal chemistry,
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
June 2008, Antimicrobial agents and chemotherapy,
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
September 2012, Antimicrobial agents and chemotherapy,
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
November 2021, Antimicrobial agents and chemotherapy,
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
March 2012, Antimicrobial agents and chemotherapy,
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
October 1992, Biochemical pharmacology,
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
December 1990, Science (New York, N.Y.),
Eleftherios Michailidis, and Bruno Marchand, and Eiichi N Kodama, and Kamlendra Singh, and Masao Matsuoka, and Karen A Kirby, and Emily M Ryan, and Ali M Sawani, and Eva Nagy, and Noriyuki Ashida, and Hiroaki Mitsuya, and Michael A Parniak, and Stefan G Sarafianos
November 1993, Biochemistry,
Copied contents to your clipboard!