Non-covalent interactions in blue copper protein probed by Met16 mutation and electronic and resonance Raman spectroscopy of Achromobacter cycloclastes pseudoazurin. 2010

Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
Department of Chemistry, University of Houston, Houston, TX 77204-5003, USA.

We have used low-temperature (77K) resonance Raman (RR) spectroscopy as a probe of the electronic and molecular structure to investigate weak pi-pi interactions between the metal ion-coordinated His imidazoles and aromatic side chains in the second coordination sphere of blue copper proteins. For this purpose, the RR spectra of Met16 mutants of Achromobacter cycloclastes pseudoazurin (AcPAz) with aromatic (Met16Tyr, Met16Trp, and Met16Phe) and aliphatic (Met16Ala, Met16Val, Met16Leu, and Met16Ile) amino acid side chains have been obtained and analyzed over the 100-500cm(-1) spectral region. Subtle strengthening of the Cu(II)-S(Cys) interaction on replacing Met16 with Tyr, Trp, and Phe is indicated by the upshifted (0.3-0.8cm(-1)) RR bands involving nu(Cu-S)(Cys) stretching modes. In contrast, the RR spectra of Met16 mutants with aliphatic amino acids revealed larger (0.2-1.8cm(-1)) shifts of the nu(Cu-S)(Cys) stretching modes to a lower frequency region, which indicate a weakening of the Cu(II)-S(Cys) bond. Comparisons of the predominantly nu(Cu-S)(Cys) stretching RR peaks of the Met16X=Tyr, Trp, and Phe variants, with the molar absorptivity ratio epsilon(1)/epsilon(2) of sigma( approximately 455nm)/pi( approximately 595nm) (Cys)S-->Cu(II) charge-transfer bands in the optical spectrum and the axial/rhombic EPR signals, revealed a slightly more trigonal disposition of ligands about the copper(II) ion. In contrast, the RR spectra of Met16Z=Ala, Val, Leu, and Ile variants with aliphatic amino acid side chains show a more tetrahedral perturbation of the copper active site, as judged by the lower frequencies of the nu(Cu-S)(Cys) stretching modes, much larger values of the epsilon(1)/epsilon(2) ratio, and the increased rhombicity of the EPR spectra.

UI MeSH Term Description Entries
D008667 Metalloproteins Proteins that have one or more tightly bound metal ions forming part of their structure. (Dorland, 28th ed) Metalloprotein
D008715 Methionine A sulfur-containing essential L-amino acid that is important in many body functions. L-Methionine,Liquimeth,Methionine, L-Isomer,Pedameth,L-Isomer Methionine,Methionine, L Isomer
D008958 Models, Molecular Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures. Molecular Models,Model, Molecular,Molecular Model
D009154 Mutation Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations. Mutations
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D002352 Carrier Proteins Proteins that bind or transport specific substances in the blood, within the cell, or across cell membranes. Binding Proteins,Carrier Protein,Transport Protein,Transport Proteins,Binding Protein,Protein, Carrier,Proteins, Carrier
D004563 Electrochemistry The study of chemical changes resulting from electrical action and electrical activity resulting from chemical changes. Electrochemistries
D001400 Azurin A bacterial protein from Pseudomonas, Bordetella, or Alcaligenes which operates as an electron transfer unit associated with the cytochrome chain. The protein has a molecular weight of approximately 16,000, contains a single copper atom, is intensively blue, and has a fluorescence emission band centered at 308nm.
D001426 Bacterial Proteins Proteins found in any species of bacterium. Bacterial Gene Products,Bacterial Gene Proteins,Gene Products, Bacterial,Bacterial Gene Product,Bacterial Gene Protein,Bacterial Protein,Gene Product, Bacterial,Gene Protein, Bacterial,Gene Proteins, Bacterial,Protein, Bacterial,Proteins, Bacterial
D013059 Spectrum Analysis, Raman Analysis of the intensity of Raman scattering of monochromatic light as a function of frequency of the scattered light. Raman Spectroscopy,Analysis, Raman Spectrum,Raman Optical Activity Spectroscopy,Raman Scattering,Raman Spectrum Analysis,Scattering, Raman,Spectroscopy, Raman

Related Publications

Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
October 1988, The Journal of biological chemistry,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
October 1995, The Journal of biological chemistry,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
November 2000, Journal of inorganic biochemistry,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
May 1987, Biochemical and biophysical research communications,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
May 2011, Biophysical journal,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
January 2001, Methods in enzymology,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
September 2007, The Analyst,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
March 1988, The Journal of biological chemistry,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
January 2005, Journal of inorganic biochemistry,
Marzena B Fitzpatrick, and Yuji Obara, and Koyu Fujita, and Doreen E Brown, and David M Dooley, and Takamitsu Kohzuma, and Roman S Czernuszewicz
July 1991, Biochemistry,
Copied contents to your clipboard!