Free radicals in L-arginine x HCl x H2O single crystals X-irradiated at 66K- EPR, ENDOR, EIE and DFT studies. 2010

Yiying Zhou, and William H Nelson
Department of Physics and Astronomy, Georgia State University, P.O. Box 4106, Atlanta, Georgia 30302-4106, USA.

X-irradiation of L-arginine hydrochloride monohydrate crystals at 66 K led to at least five radicals detectable with K-band Electron Paramagnetic Resonance (EPR), Electron-Nuclear DOuble Resonance (ENDOR) and ENDOR-induced EPR (EIE) techniques. Radicals R1a and R1b were identified as carboxyl-centered radicals from one-electron reduction, (H(2)OOC*)CH (NH(3))(+)(CH(2))(3)NHC(NH(2))(2)(+) in two different conformations arising from the two geometrically distinct molecules of the asymmetric unit in the crystal. Density-Functional Theory (DFT) calculations on cluster models constructed separately for each molecule of the asymmetric unit support the assignments. Radical R2 was identified as the decarboxylation radical, *CH(NH(3))(+)(CH(2))(3)NHC (NH(2))(2)(+). Radical R3, with two proton couplings and one nitrogen coupling, was identified as a radical with the unpaired electron localized on the guanidyl group, (-)(OOC)CH(NH(3))(+)(CH(2))(3)NHC*(NH(2))(2)(+). R3 is a product of one-electron reduction different from radicals R1a and R1b. DFT calculations on a cluster model reproduced the experimental values very well and thus supported the assignment of R3. Geometry optimization indicated that the guanidyl group transformed from planar to pyramidal upon trapping the electron. Radical R4 was identified as a side chain dehydrogenation radical, (-)(OOC)CH(NH(3))(+)(CH(2))(2)*CH NHC(NH(2))(2)(+). It was not possible to collect sufficient data to identify radical R5, although it clearly exhibited hyperfine coupling to one nonexchangeable beta-proton.

UI MeSH Term Description Entries
D008958 Models, Molecular Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures. Molecular Models,Model, Molecular,Molecular Model
D008968 Molecular Conformation The characteristic three-dimensional shape of a molecule. Molecular Configuration,3D Molecular Structure,Configuration, Molecular,Molecular Structure, Three Dimensional,Three Dimensional Molecular Structure,3D Molecular Structures,Configurations, Molecular,Conformation, Molecular,Conformations, Molecular,Molecular Configurations,Molecular Conformations,Molecular Structure, 3D,Molecular Structures, 3D,Structure, 3D Molecular,Structures, 3D Molecular
D011789 Quantum Theory The theory that the radiation and absorption of energy take place in definite quantities called quanta (E) which vary in size and are defined by the equation E Quantum Theories,Theories, Quantum,Theory, Quantum
D002264 Carboxylic Acids Organic compounds containing the carboxy group (-COOH). This group of compounds includes amino acids and fatty acids. Carboxylic acids can be saturated, unsaturated, or aromatic. Carboxylic Acid,Acid, Carboxylic,Acids, Carboxylic
D004578 Electron Spin Resonance Spectroscopy A technique applicable to the wide variety of substances which exhibit paramagnetism because of the magnetic moments of unpaired electrons. The spectra are useful for detection and identification, for determination of electron structure, for study of interactions between molecules, and for measurement of nuclear spins and moments. (From McGraw-Hill Encyclopedia of Science and Technology, 7th edition) Electron nuclear double resonance (ENDOR) spectroscopy is a variant of the technique which can give enhanced resolution. Electron spin resonance analysis can now be used in vivo, including imaging applications such as MAGNETIC RESONANCE IMAGING. ENDOR,Electron Nuclear Double Resonance,Electron Paramagnetic Resonance,Paramagnetic Resonance,Electron Spin Resonance,Paramagnetic Resonance, Electron,Resonance, Electron Paramagnetic,Resonance, Electron Spin,Resonance, Paramagnetic
D004583 Electrons Stable elementary particles having the smallest known negative charge, present in all elements; also called negatrons. Positively charged electrons are called positrons. The numbers, energies and arrangement of electrons around atomic nuclei determine the chemical identities of elements. Beams of electrons are called CATHODE RAYS. Fast Electrons,Negatrons,Positrons,Electron,Electron, Fast,Electrons, Fast,Fast Electron,Negatron,Positron
D005609 Free Radicals Highly reactive molecules with an unsatisfied electron valence pair. Free radicals are produced in both normal and pathological processes. Free radicals include reactive oxygen and nitrogen species (RONS). They are proven or suspected agents of tissue damage in a wide variety of circumstances including radiation, damage from environment chemicals, and aging. Natural and pharmacological prevention of free radical damage is being actively investigated. Free Radical
D006851 Hydrochloric Acid A strong corrosive acid that is commonly used as a laboratory reagent. It is formed by dissolving hydrogen chloride in water. GASTRIC ACID is the hydrochloric acid component of GASTRIC JUICE. Hydrogen Chloride,Muriatic Acid,Acid, Hydrochloric,Acid, Muriatic,Chloride, Hydrogen
D006859 Hydrogen The first chemical element in the periodic table with atomic symbol H, and atomic number 1. Protium (atomic weight 1) is by far the most common hydrogen isotope. Hydrogen also exists as the stable isotope DEUTERIUM (atomic weight 2) and the radioactive isotope TRITIUM (atomic weight 3). Hydrogen forms into a diatomic molecule at room temperature and appears as a highly flammable colorless and odorless gas. Protium,Hydrogen-1
D001120 Arginine An essential amino acid that is physiologically active in the L-form. Arginine Hydrochloride,Arginine, L-Isomer,DL-Arginine Acetate, Monohydrate,L-Arginine,Arginine, L Isomer,DL Arginine Acetate, Monohydrate,Hydrochloride, Arginine,L Arginine,L-Isomer Arginine,Monohydrate DL-Arginine Acetate

Related Publications

Yiying Zhou, and William H Nelson
August 2006, The journal of physical chemistry. A,
Yiying Zhou, and William H Nelson
January 1996, Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine,
Yiying Zhou, and William H Nelson
February 2006, The journal of physical chemistry. A,
Yiying Zhou, and William H Nelson
January 1989, Free radical research communications,
Yiying Zhou, and William H Nelson
October 2006, Magnetic resonance in chemistry : MRC,
Yiying Zhou, and William H Nelson
November 1988, Radiation research,
Yiying Zhou, and William H Nelson
March 1989, Radiation research,
Copied contents to your clipboard!