BIOMAT Database Logo BIOMAT Database Logo

Sphingomonas humi sp. nov., isolated from soil. 2010

Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Department of Oriental Medicinal Manufacturing & Processing, College of Life Science, Kyung Hee University, Yongin, 446-701, Republic of Korea.

A gram-negative, non-motile, non-spore-forming, small, orange, rod-shaped bacterium was isolated from soil in South Korea and characterized to determine its taxonomic position. Phylogenetic analysis based on 16S rRNA gene sequence examination revealed that strain PB323(T) belongs to the family Sphingomonadaceae. The highest degree of sequence similarity was found with Sphingomonas kaistensis PB56(T) (98.9%), followed by Sphingomonas astaxanthinifaciens TDMA-17(T) (98.3%). Chemotaxonomic characteristics (the G+C content of the genomic DNA 69.0 mol%, Q-10 quinone system, C(18:1) omega7c/omega9t/omega12t, C(16:1) omega7c/C(15:0) iso 2OH, C(17:1) omega6c, and C16:0 as the major fatty acids) corroborated assignment of strain PB323(T) to the genus Sphingomonas. Results of physiological and biochemical tests clearly demonstrate that strain PB323(T) represents a distinct species and support its affiliation with the genus Sphingomonas. Based on these data, PB323(T) (=KCTC 12341(T) =JCM 16603T =KEMB 9004-003(T)) should be classified as a type strain of a novel species, for which the name Sphingomonas humi sp. nov. is proposed.

UI MeSH Term Description Entries
D008969 Molecular Sequence Data Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories. Sequence Data, Molecular,Molecular Sequencing Data,Data, Molecular Sequence,Data, Molecular Sequencing,Sequencing Data, Molecular
D009693 Nucleic Acid Hybridization Widely used technique which exploits the ability of complementary sequences in single-stranded DNAs or RNAs to pair with each other to form a double helix. Hybridization can take place between two complimentary DNA sequences, between a single-stranded DNA and a complementary RNA, or between two RNA sequences. The technique is used to detect and isolate specific sequences, measure homology, or define other characteristics of one or both strands. (Kendrew, Encyclopedia of Molecular Biology, 1994, p503) Genomic Hybridization,Acid Hybridization, Nucleic,Acid Hybridizations, Nucleic,Genomic Hybridizations,Hybridization, Genomic,Hybridization, Nucleic Acid,Hybridizations, Genomic,Hybridizations, Nucleic Acid,Nucleic Acid Hybridizations
D010802 Phylogeny The relationships of groups of organisms as reflected by their genetic makeup. Community Phylogenetics,Molecular Phylogenetics,Phylogenetic Analyses,Phylogenetic Analysis,Phylogenetic Clustering,Phylogenetic Comparative Analysis,Phylogenetic Comparative Methods,Phylogenetic Distance,Phylogenetic Generalized Least Squares,Phylogenetic Groups,Phylogenetic Incongruence,Phylogenetic Inference,Phylogenetic Networks,Phylogenetic Reconstruction,Phylogenetic Relatedness,Phylogenetic Relationships,Phylogenetic Signal,Phylogenetic Structure,Phylogenetic Tree,Phylogenetic Trees,Phylogenomics,Analyse, Phylogenetic,Analysis, Phylogenetic,Analysis, Phylogenetic Comparative,Clustering, Phylogenetic,Community Phylogenetic,Comparative Analysis, Phylogenetic,Comparative Method, Phylogenetic,Distance, Phylogenetic,Group, Phylogenetic,Incongruence, Phylogenetic,Inference, Phylogenetic,Method, Phylogenetic Comparative,Molecular Phylogenetic,Network, Phylogenetic,Phylogenetic Analyse,Phylogenetic Clusterings,Phylogenetic Comparative Analyses,Phylogenetic Comparative Method,Phylogenetic Distances,Phylogenetic Group,Phylogenetic Incongruences,Phylogenetic Inferences,Phylogenetic Network,Phylogenetic Reconstructions,Phylogenetic Relatednesses,Phylogenetic Relationship,Phylogenetic Signals,Phylogenetic Structures,Phylogenetic, Community,Phylogenetic, Molecular,Phylogenies,Phylogenomic,Reconstruction, Phylogenetic,Relatedness, Phylogenetic,Relationship, Phylogenetic,Signal, Phylogenetic,Structure, Phylogenetic,Tree, Phylogenetic
D011809 Quinones Hydrocarbon rings which contain two ketone moieties in any position. They can be substituted in any position except at the ketone groups.
D004269 DNA, Bacterial Deoxyribonucleic acid that makes up the genetic material of bacteria. Bacterial DNA
D004275 DNA, Ribosomal DNA sequences encoding RIBOSOMAL RNA and the segments of DNA separating the individual ribosomal RNA genes, referred to as RIBOSOMAL SPACER DNA. Ribosomal DNA,rDNA
D005227 Fatty Acids Organic, monobasic acids derived from hydrocarbons by the equivalent of oxidation of a methyl group to an alcohol, aldehyde, and then acid. Fatty acids are saturated and unsaturated (FATTY ACIDS, UNSATURATED). (Grant & Hackh's Chemical Dictionary, 5th ed) Aliphatic Acid,Esterified Fatty Acid,Fatty Acid,Fatty Acids, Esterified,Fatty Acids, Saturated,Saturated Fatty Acid,Aliphatic Acids,Acid, Aliphatic,Acid, Esterified Fatty,Acid, Saturated Fatty,Esterified Fatty Acids,Fatty Acid, Esterified,Fatty Acid, Saturated,Saturated Fatty Acids
D001482 Base Composition The relative amounts of the PURINES and PYRIMIDINES in a nucleic acid. Base Ratio,G+C Composition,Guanine + Cytosine Composition,G+C Content,GC Composition,GC Content,Guanine + Cytosine Content,Base Compositions,Base Ratios,Composition, Base,Composition, G+C,Composition, GC,Compositions, Base,Compositions, G+C,Compositions, GC,Content, G+C,Content, GC,Contents, G+C,Contents, GC,G+C Compositions,G+C Contents,GC Compositions,GC Contents,Ratio, Base,Ratios, Base
D012336 RNA, Ribosomal, 16S Constituent of 30S subunit prokaryotic ribosomes containing 1600 nucleotides and 21 proteins. 16S rRNA is involved in initiation of polypeptide synthesis. 16S Ribosomal RNA,16S rRNA,RNA, 16S Ribosomal,Ribosomal RNA, 16S,rRNA, 16S
D012988 Soil Microbiology The presence of bacteria, viruses, and fungi in the soil. This term is not restricted to pathogenic organisms. Microbiology, Soil

Related Publications

Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Deinococcus humi sp. nov., isolated from soil.
December 2012, International journal of systematic and evolutionary microbiology,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Comamonas humi sp. nov., isolated from soil.
December 2014, International journal of systematic and evolutionary microbiology,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Sphingobacterium humi sp. nov., isolated from soil.
November 2017, International journal of systematic and evolutionary microbiology,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Gordonia humi sp. nov., isolated from soil.
January 2011, International journal of systematic and evolutionary microbiology,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Lysobacter humi sp. nov., isolated from soil.
April 2017, International journal of systematic and evolutionary microbiology,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Noviherbaspirillum humi sp. nov., isolated from soil.
May 2016, Antonie van Leeuwenhoek,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Burkholderia humi sp. nov., isolated from peat soil.
March 2013, Current microbiology,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Pseudomonas humi sp. nov., isolated from leaf soil.
March 2019, Archives of microbiology,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Leucobacter humi sp. nov., Isolated from Forest Soil.
August 2015, Current microbiology,
Tae Hoo Yi, and Chang-Kyun Han, and Sathiyaraj Srinivasan, and Kang Jin Lee, and Myung Kyum Kim
Cohnella humi sp. nov., isolated from Russian soil.
October 2014, Current microbiology,
Copied contents to your clipboard!