[Antisense transcription within the hns locus of Escherichia coli]. 2010

M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'

Scanning the entire genome of E. coli by means of pattern-recognition software PlatProm spotted out more than a thousand of potential start points for antisense transcription. Taking into account possible role of antisense RNAs in the cell regulatory networks, our top-priority interest was focused on the promoter-like sites found within genes of transcription regulators. One of them (hns) encodes a major nucleoid protein affecting expression pattern of many genomic loci. Several potential start points for antisense transcription were found within its coding sequence. Gel-retardation assays, potassium permanganate and DNAse I foot-printings confirmed the ability of the intragenic promoter located approximately 280 bp downstream of ATG to bind RNA polymerase. Primer extension revealed the cDNA of the expected size while Northern blot hybridization assumes the presence of aRNA among cellular RNAs. Relative abundance of antisense RNA and hns-mRNA in vivo exhibited dependence on growth conditions thus assuming existence of regulatory pathways keeping cellular concentration of these two transcripts at the optimal level.

UI MeSH Term Description Entries
D012329 RNA, Bacterial Ribonucleic acid in bacteria having regulatory and catalytic roles as well as involvement in protein synthesis. Bacterial RNA
D014158 Transcription, Genetic The biosynthesis of RNA carried out on a template of DNA. The biosynthesis of DNA from an RNA template is called REVERSE TRANSCRIPTION. Genetic Transcription
D015964 Gene Expression Regulation, Bacterial Any of the processes by which cytoplasmic or intercellular factors influence the differential control of gene action in bacteria. Bacterial Gene Expression Regulation,Regulation of Gene Expression, Bacterial,Regulation, Gene Expression, Bacterial
D016372 RNA, Antisense RNA molecules which hybridize to complementary sequences in either RNA or DNA altering the function of the latter. Endogenous antisense RNAs function as regulators of gene expression by a variety of mechanisms. Synthetic antisense RNAs are used to effect the functioning of specific genes for investigative or therapeutic purposes. Antisense RNA,Anti-Sense RNA,Anti Sense RNA,RNA, Anti-Sense
D048168 Escherichia coli K12 A species of gram-negative, rod-shaped bacteria belonging to the K serogroup of ESCHERICHIA COLI. It lives as a harmless inhabitant of the human LARGE INTESTINE and is widely used in medical and GENETIC RESEARCH. E coli K12
D056426 Genetic Loci Specific regions that are mapped within a GENOME. Genetic loci are usually identified with a shorthand notation that indicates the chromosome number and the position of a specific band along the P or Q arm of the chromosome where they are found. For example the locus 6p21 is found within band 21 of the P-arm of CHROMOSOME 6. Many well known genetic loci are also known by common names that are associated with a genetic function or HEREDITARY DISEASE. Genetic Locus,Loci, Genetic,Locus, Genetic

Related Publications

M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
May 2010, mBio,
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
January 1989, FEMS microbiology letters,
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
December 2012, Genes & development,
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
May 2010, mBio,
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
February 1971, Journal of molecular biology,
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
February 2001, Biochimie,
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
October 2021, Chemical communications (Cambridge, England),
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
January 2010, Journal of molecular microbiology and biotechnology,
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
April 1995, Microbiology (Reading, England),
M N Tututkina, and K S Shavkunov, and I S Masulis, and O N Ozolin'
July 1999, Proceedings of the National Academy of Sciences of the United States of America,
Copied contents to your clipboard!