BIOMAT Database Logo BIOMAT Database Logo

5S rRNA sequences of myxobacteria and radioresistant bacteria and implications for eubacterial evolution. 1990

H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Departement Biochemie, Universiteit Antwerpen (UIA), Belgium.

5S rRNA sequences were determined for the myxobacteria Cystobacter fuscus, Myxococcus coralloides, Sorangium cellulosum, and Nannocystis exedens and for the radioresistant bacteria Deinococcus radiodurans and Deinococcus radiophilus. A dendrogram was constructed by using weighted pairwise grouping based on these and all other previously known eubacterial 5S rRNA sequences, and this dendrogram showed differences as well as similarities compared with results derived from 16S rRNA analyses. In the dendrogram, Deinococcus 5S rRNA sequences clustered with 5S rRNA sequences of the genus Thermus, as suggested by the results of 16S rRNA analyses. However, in contrast to the 16S rRNA results, the Deinococcus-Thermus cluster divided the 5S rRNA sequences of the alpha subdivision of the class Proteobacteria from the 5S rRNA sequences of the beta and gamma subgroups of the Proteobacteria. The myxobacterial 5S rRNA sequence data failed to confirm the existence of a delta subgroup of the class Proteobacteria, which was suggested by the results of 16S rRNA analyses.

UI MeSH Term Description Entries
D008969 Molecular Sequence Data Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories. Sequence Data, Molecular,Molecular Sequencing Data,Data, Molecular Sequence,Data, Molecular Sequencing,Sequencing Data, Molecular
D009231 Myxococcales An order of rod-shaped, gram-negative fruiting gliding bacteria found in SOIL; WATER; and HUMUS. Myxobacterales,Myxobacteria,Polyangiaceae,Polyangium,Slime Bacteria
D010802 Phylogeny The relationships of groups of organisms as reflected by their genetic makeup. Community Phylogenetics,Molecular Phylogenetics,Phylogenetic Analyses,Phylogenetic Analysis,Phylogenetic Clustering,Phylogenetic Comparative Analysis,Phylogenetic Comparative Methods,Phylogenetic Distance,Phylogenetic Generalized Least Squares,Phylogenetic Groups,Phylogenetic Incongruence,Phylogenetic Inference,Phylogenetic Networks,Phylogenetic Reconstruction,Phylogenetic Relatedness,Phylogenetic Relationships,Phylogenetic Signal,Phylogenetic Structure,Phylogenetic Tree,Phylogenetic Trees,Phylogenomics,Analyse, Phylogenetic,Analysis, Phylogenetic,Analysis, Phylogenetic Comparative,Clustering, Phylogenetic,Community Phylogenetic,Comparative Analysis, Phylogenetic,Comparative Method, Phylogenetic,Distance, Phylogenetic,Group, Phylogenetic,Incongruence, Phylogenetic,Inference, Phylogenetic,Method, Phylogenetic Comparative,Molecular Phylogenetic,Network, Phylogenetic,Phylogenetic Analyse,Phylogenetic Clusterings,Phylogenetic Comparative Analyses,Phylogenetic Comparative Method,Phylogenetic Distances,Phylogenetic Group,Phylogenetic Incongruences,Phylogenetic Inferences,Phylogenetic Network,Phylogenetic Reconstructions,Phylogenetic Relatednesses,Phylogenetic Relationship,Phylogenetic Signals,Phylogenetic Structures,Phylogenetic, Community,Phylogenetic, Molecular,Phylogenies,Phylogenomic,Reconstruction, Phylogenetic,Relatedness, Phylogenetic,Relationship, Phylogenetic,Signal, Phylogenetic,Structure, Phylogenetic,Tree, Phylogenetic
D005051 Eubacterium A genus of gram-positive, rod-shaped bacteria found in cavities of man and animals, animal and plant products, infections of soft tissue, and soil. Some species may be pathogenic. No endospores are produced. The genus Eubacterium should not be confused with EUBACTERIA, one of the three domains of life. Butyribacterium
D005075 Biological Evolution The process of cumulative change over successive generations through which organisms acquire their distinguishing morphological and physiological characteristics. Evolution, Biological
D001482 Base Composition The relative amounts of the PURINES and PYRIMIDINES in a nucleic acid. Base Ratio,G+C Composition,Guanine + Cytosine Composition,G+C Content,GC Composition,GC Content,Guanine + Cytosine Content,Base Compositions,Base Ratios,Composition, Base,Composition, G+C,Composition, GC,Compositions, Base,Compositions, G+C,Compositions, GC,Content, G+C,Content, GC,Contents, G+C,Contents, GC,G+C Compositions,G+C Contents,GC Compositions,GC Contents,Ratio, Base,Ratios, Base
D001483 Base Sequence The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence. DNA Sequence,Nucleotide Sequence,RNA Sequence,DNA Sequences,Base Sequences,Nucleotide Sequences,RNA Sequences,Sequence, Base,Sequence, DNA,Sequence, Nucleotide,Sequence, RNA,Sequences, Base,Sequences, DNA,Sequences, Nucleotide,Sequences, RNA
D012341 RNA, Ribosomal, 5S Constituent of the 50S subunit of prokaryotic ribosomes containing about 120 nucleotides and 34 proteins. It is also a constituent of the 60S subunit of eukaryotic ribosomes. 5S rRNA is involved in initiation of polypeptide synthesis. 5S Ribosomal RNA,5S rRNA,RNA, 5S Ribosomal,Ribosomal RNA, 5S,rRNA, 5S
D016000 Cluster Analysis A set of statistical methods used to group variables or observations into strongly inter-related subgroups. In epidemiology, it may be used to analyze a closely grouped series of events or cases of disease or other health-related phenomenon with well-defined distribution patterns in relation to time or place or both. Clustering,Analyses, Cluster,Analysis, Cluster,Cluster Analyses,Clusterings

Related Publications

H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Compilation of 5S rRNA and 5S rRNA gene sequences.
April 1991, Nucleic acids research,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Compilation of 5S rRNA and 5S rRNA gene sequences.
January 1997, Nucleic acids research,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Compilation of 5S rRNA and 5S rRNA gene sequences.
January 1988, Nucleic acids research,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Compilation of 5S rRNA and 5S rRNA gene sequences.
April 1990, Nucleic acids research,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Nuclease S1 analysis of eubacterial 5S rRNA secondary structure.
January 1985, Journal of molecular evolution,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Phylogenetic analysis of the coryneform bacteria by 5S rRNA sequences.
May 1987, Journal of bacteriology,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Evolution of green plants as deduced from 5S rRNA sequences.
February 1985, Proceedings of the National Academy of Sciences of the United States of America,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Evolutionary relationship of denitrifying bacteria as deduced from 5S rRNA sequences.
November 1986, Journal of biochemistry,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
5S rRNA sequences from four marine invertebrates and implications for base pairing models of metazoan sequences.
August 1983, Nucleic acids research,
H Van den Eynde, and Y Van de Peer, and H Vandenabeele, and M Van Bogaert, and R De Wachter
Structure and evolution of 5S rRNA genes.
January 1990, Postepy biochemii,
Copied contents to your clipboard!