Biomaterial Database

Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis. 2011

Daphné Autran, and Célia Baroux, and Michael T Raissig, and Thomas Lenormand, and Michael Wittig, and Stefan Grob, and Andrea Steimer, and Matthias Barann, and Ulrich C Klostermeier, and Olivier Leblanc, and Jean-Philippe Vielle-Calzada, and Phillip Rosenstiel, and Daniel Grimanelli, and Ueli Grossniklaus

Diversité, Adaptation et Développement des Plantes, Institut de Recherche pour le Développement, Université de Montpellier, UMR 232, Montpellier 34394, France.

Defining the contributions and interactions of paternal and maternal genomes during embryo development is critical to understand the fundamental processes involved in hybrid vigor, hybrid sterility, and reproductive isolation. To determine the parental contributions and their regulation during Arabidopsis embryogenesis, we combined deep-sequencing-based RNA profiling and genetic analyses. At the 2-4 cell stage there is a strong, genome-wide dominance of maternal transcripts, although transcripts are contributed by both parental genomes. At the globular stage the relative paternal contribution is higher, largely due to a gradual activation of the paternal genome. We identified two antagonistic maternal pathways that control these parental contributions. Paternal alleles are initially downregulated by the chromatin siRNA pathway, linked to DNA and histone methylation, whereas transcriptional activation requires maternal activity of the histone chaperone complex CAF1. Our results define maternal epigenetic pathways controlling the parental contributions in plant embryos, which are distinct from those regulating genomic imprinting.

UI	MeSH Term	Description	Entries
D011495	Histone-Lysine N-Methyltransferase	An enzyme that catalyzes the methylation of the epsilon-amino group of lysine residues in proteins to yield epsilon mono-, di-, and trimethyllysine.	Protein Lysine Methyltransferase,Protein Methylase III,Protein Methyltransferase III,Histone-Lysine Methyltransferase,Histone Lysine Methyltransferase,Histone Lysine N Methyltransferase,Methyltransferase, Histone-Lysine,Methyltransferase, Protein Lysine,N-Methyltransferase, Histone-Lysine
D000072260	RNA Splicing Factors	RNA-binding proteins that facilitate or inhibit RNA SPLICING.	Splicing Factor,Splicing Factors,Factor, Splicing,Factors, RNA Splicing,Factors, Splicing,Splicing Factors, RNA
D012639	Seeds	The encapsulated embryos of flowering plants. They are used as is or for animal feed because of the high content of concentrated nutrients like starches, proteins, and fats. Rapeseed, cottonseed, and sunflower seed are also produced for the oils (fats) they yield.	Diaspores,Elaiosomes,Embryos, Plant,Plant Embryos,Plant Zygotes,Zygotes, Plant,Diaspore,Elaiosome,Embryo, Plant,Plant Embryo,Plant Zygote,Seed,Zygote, Plant
D015533	Transcriptional Activation	Processes that stimulate the GENETIC TRANSCRIPTION of a gene or set of genes.	Gene Activation,Genetic Induction,Transactivation,Induction, Genetic,Trans-Activation, Genetic,Transcription Activation,Activation, Gene,Activation, Transcription,Activation, Transcriptional,Genetic Trans-Activation,Trans Activation, Genetic
D017360	Arabidopsis	A plant genus of the family BRASSICACEAE that contains ARABIDOPSIS PROTEINS and MADS DOMAIN PROTEINS. The species A. thaliana is used for experiments in classical plant genetics as well as molecular genetic studies in plant physiology, biochemistry, and development.	Arabidopsis thaliana,Cress, Mouse-ear,A. thaliana,A. thalianas,Arabidopses,Arabidopsis thalianas,Cress, Mouse ear,Cresses, Mouse-ear,Mouse-ear Cress,Mouse-ear Cresses,thaliana, A.,thaliana, Arabidopsis,thalianas, A.
D056771	Ovule	The element in plants that contains the female GAMETOPHYTES.	Female Gametes, Plant,Female Gametophytes,Megagametophyte,Megaspores, Plant,Female Gamete, Plant,Female Gametophyte,Gamete, Plant Female,Gametes, Plant Female,Gametophyte, Female,Gametophytes, Female,Megagametophytes,Megaspore, Plant,Ovules,Plant Female Gamete,Plant Female Gametes,Plant Megaspore,Plant Megaspores
D057890	Epigenomics	The systematic study of the global gene expression changes due to EPIGENETIC PROCESSES and not due to DNA base sequence changes.	Epigenetics,Epigenetic,Epigenomic
D018506	Gene Expression Regulation, Plant	Any of the processes by which nuclear, cytoplasmic, or intercellular factors influence the differential control of gene action in plants.	Plant Gene Expression Regulation,Regulation of Gene Expression, Plant,Regulation, Gene Expression, Plant
D018507	Gene Expression Regulation, Developmental	Any of the processes by which nuclear, cytoplasmic, or intercellular factors influence the differential control of gene action during the developmental stages of an organism.	Developmental Gene Expression Regulation,Embryologic Gene Expression Regulation,Gene Expression Regulation, Embryologic,Regulation of Gene Expression, Developmental,Regulation of Gene Expression, Embryologic,Regulation, Gene Expression, Developmental,Regulation, Gene Expression, Embryologic
D018745	Genome, Plant	The genetic complement of a plant (PLANTS) as represented in its DNA.	Plant Genome,Genomes, Plant,Plant Genomes