Engineering pH-gated transitions for selective and efficient double-strand DNA photocleavage in hypoxic tumors. 2011

Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States.

We describe a family of hybrid compounds for the most efficient light-activated double-strand (ds) DNA cleavage known to date. This family represents the second generation of "switchable" molecular systems for pH-gated ds DNA-cleavage which combine a potent DNA-photocleaver and a pH-regulated part derived from a dipeptide. Design of the pH-switchable part utilizes amino groups of different basicity. Whereas the basic amino groups are protonated throughout the biologically relevant pH range, the pH-gating amines undergo protonation at the pH threshold which separates cancer and normal cells. Control over the reactivity and selectivity is achieved via transformation of the initial protonation state (a monocation or a dication) into a trication at the acidic pH. This change leads to an extraordinary increase in the efficiency of ds DNA cleavage leading to the ds:ss ratios comparable with the most efficient nonenzymatic ds DNA cleavers. Statistical analysis reveals that these high ds:ss ratios result from the combination of several factors: (a) true double-stranded cleavage, and (b) conversion of single-stranded (ss)-scission into ds cleavage. Considerable part of ds cleavage is also produced via the combination of ss cleavage events.

UI MeSH Term Description Entries
D008027 Light That portion of the electromagnetic spectrum in the visible, ultraviolet, and infrared range. Light, Visible,Photoradiation,Radiation, Visible,Visible Radiation,Photoradiations,Radiations, Visible,Visible Light,Visible Radiations
D009369 Neoplasms New abnormal growth of tissue. Malignant neoplasms show a greater degree of anaplasia and have the properties of invasion and metastasis, compared to benign neoplasms. Benign Neoplasm,Cancer,Malignant Neoplasm,Tumor,Tumors,Benign Neoplasms,Malignancy,Malignant Neoplasms,Neoplasia,Neoplasm,Neoplasms, Benign,Cancers,Malignancies,Neoplasias,Neoplasm, Benign,Neoplasm, Malignant,Neoplasms, Malignant
D004151 Dipeptides Peptides composed of two amino acid units. Dipeptide
D004277 DNA, Single-Stranded A single chain of deoxyribonucleotides that occurs in some bacteria and viruses. It usually exists as a covalently closed circle. Single-Stranded DNA,DNA, Single Stranded,Single Stranded DNA
D004278 DNA, Superhelical Circular duplex DNA isolated from viruses, bacteria and mitochondria in supercoiled or supertwisted form. This superhelical DNA is endowed with free energy. During transcription, the magnitude of RNA initiation is proportional to the DNA superhelicity. DNA, Supercoiled,DNA, Supertwisted,Supercoiled DNA,Superhelical DNA,Supertwisted DNA
D004354 Drug Screening Assays, Antitumor Methods of investigating the effectiveness of anticancer cytotoxic drugs and biologic inhibitors. These include in vitro cell-kill models and cytostatic dye exclusion tests as well as in vivo measurement of tumor growth parameters in laboratory animals. Anticancer Drug Sensitivity Tests,Antitumor Drug Screens,Cancer Drug Tests,Drug Screening Tests, Tumor-Specific,Dye Exclusion Assays, Antitumor,Anti-Cancer Drug Screens,Antitumor Drug Screening Assays,Tumor-Specific Drug Screening Tests,Anti Cancer Drug Screens,Anti-Cancer Drug Screen,Antitumor Drug Screen,Cancer Drug Test,Drug Screen, Anti-Cancer,Drug Screen, Antitumor,Drug Screening Tests, Tumor Specific,Drug Screens, Anti-Cancer,Drug Screens, Antitumor,Drug Test, Cancer,Drug Tests, Cancer,Screen, Anti-Cancer Drug,Screen, Antitumor Drug,Screens, Anti-Cancer Drug,Screens, Antitumor Drug,Test, Cancer Drug,Tests, Cancer Drug,Tumor Specific Drug Screening Tests
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D006863 Hydrogen-Ion Concentration The normality of a solution with respect to HYDROGEN ions; H+. It is related to acidity measurements in most cases by pH pH,Concentration, Hydrogen-Ion,Concentrations, Hydrogen-Ion,Hydrogen Ion Concentration,Hydrogen-Ion Concentrations
D000480 Alkynes Hydrocarbons with at least one triple bond in the linear portion, of the general formula Cn-H2n-2. Acetylenic Compounds,Alkyne,Acetylenes
D013237 Stereoisomerism The phenomenon whereby compounds whose molecules have the same number and kind of atoms and the same atomic arrangement, but differ in their spatial relationships. (From McGraw-Hill Dictionary of Scientific and Technical Terms, 5th ed) Molecular Stereochemistry,Stereoisomers,Stereochemistry, Molecular,Stereoisomer

Related Publications

Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
September 2016, Journal of medicinal chemistry,
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
March 1996, Nucleic acids research,
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
January 2017, PloS one,
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
March 1998, Biochemistry,
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
January 2004, Biopolymers,
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
December 1999, Photochemistry and photobiology,
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
November 2016, Cell,
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
March 2011, Chemical communications (Cambridge, England),
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
July 2022, Scientific reports,
Wang-Yong Yang, and Saumya Roy, and Boondaniwon Phrathep, and Zach Rengert, and Rachael Kenworthy, and Diego A R Zorio, and Igor V Alabugin
April 2019, Cell,
Copied contents to your clipboard!