LINE1 family member is negative regulator of HLA-G expression. 2012

Masashi Ikeno, and Nobutaka Suzuki, and Megumi Kamiya, and Yuji Takahashi, and Jun Kudoh, and Tsuneko Okazaki
School of Medicine, Keio University, Shinanomachi, Shinjuku-ku, Tokyo 160-8582, Japan. mikeno@fujita-hu.ac.jp

Class Ia molecules of human leucocyte antigen (HLA-A, -B and -C) are widely expressed and play a central role in the immune system by presenting peptides derived from the lumen of the endoplasmic reticulum. In contrast, class Ib molecules such as HLA-G serve novel functions. The distribution of HLA-G is mostly limited to foetal trophoblastic tissues and some tumour tissues. The mechanism required for the tissue-specific regulation of the HLA-G gene has not been well understood. Here, we investigated the genomic regulation of HLA-G by manipulating one copy of a genomic DNA fragment on a human artificial chromosome. We identified a potential negative regulator of gene expression in a sequence upstream of HLA-G that overlapped with the long interspersed element (LINE1); silencing of HLA-G involved a DNA secondary structure generated in LINE1. The presence of a LINE1 gene silencer may explain the limited expression of HLA-G compared with other class I genes.

UI MeSH Term Description Entries
D009690 Nucleic Acid Conformation The spatial arrangement of the atoms of a nucleic acid or polynucleotide that results in its characteristic 3-dimensional shape. DNA Conformation,RNA Conformation,Conformation, DNA,Conformation, Nucleic Acid,Conformation, RNA,Conformations, DNA,Conformations, Nucleic Acid,Conformations, RNA,DNA Conformations,Nucleic Acid Conformations,RNA Conformations
D002478 Cells, Cultured Cells propagated in vitro in special media conducive to their growth. Cultured cells are used to study developmental, morphologic, metabolic, physiologic, and genetic processes, among others. Cultured Cells,Cell, Cultured,Cultured Cell
D005822 Genetic Vectors DNA molecules capable of autonomous replication within a host cell and into which other DNA sequences can be inserted and thus amplified. Many are derived from PLASMIDS; BACTERIOPHAGES; or VIRUSES. They are used for transporting foreign genes into recipient cells. Genetic vectors possess a functional replicator site and contain GENETIC MARKERS to facilitate their selective recognition. Cloning Vectors,Shuttle Vectors,Vectors, Genetic,Cloning Vector,Genetic Vector,Shuttle Vector,Vector, Cloning,Vector, Genetic,Vector, Shuttle,Vectors, Cloning,Vectors, Shuttle
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D000818 Animals Unicellular or multicellular, heterotrophic organisms, that have sensation and the power of voluntary movement. Under the older five kingdom paradigm, Animalia was one of the kingdoms. Under the modern three domain model, Animalia represents one of the many groups in the domain EUKARYOTA. Animal,Metazoa,Animalia
D016678 Genome The genetic complement of an organism, including all of its GENES, as represented in its DNA, or in some cases, its RNA. Genomes
D051379 Mice The common name for the genus Mus. Mice, House,Mus,Mus musculus,Mice, Laboratory,Mouse,Mouse, House,Mouse, Laboratory,Mouse, Swiss,Mus domesticus,Mus musculus domesticus,Swiss Mice,House Mice,House Mouse,Laboratory Mice,Laboratory Mouse,Mice, Swiss,Swiss Mouse,domesticus, Mus musculus
D059951 HLA-G Antigens Class I human histocompatibility (HLA) surface antigens encoded by alleles on locus B of the HLA complex. The HLA-G antigens are considered non-classical class I antigens due to their distinct tissue distribution which differs from HLA-A; HLA-B; and HLA-C antigens. Note that several isoforms of HLA-G antigens result from alternative splicing of messenger RNAs produced from the HLA-G*01 allele. HLA G,HLA-G,HLA-G Antigen,HLA-G1,HLA-G1 Isoform,HLA-G2,HLA-G2 Isoform,HLA-G3,HLA-G3 Isoform,HLA-G4,HLA-G4 Isoform,HLA-G5,HLA-G5 Isoform,HLA-G6,HLA-G6 Isoform,HLA-G7,HLA-G7 Antigen,HLA-G7 Isoform,Antigen, HLA-G,Antigen, HLA-G7,Antigens, HLA-G,HLA G Antigen,HLA G Antigens,HLA G1 Isoform,HLA G2 Isoform,HLA G3 Isoform,HLA G6 Isoform,HLA G7 Antigen,HLA G7 Isoform,Isoform, HLA-G4,Isoform, HLA-G6,Isoform, HLA-G7
D020084 Long Interspersed Nucleotide Elements Highly repeated sequences, 6K-8K base pairs in length, which contain RNA polymerase II promoters. They also have an open reading frame that is related to the reverse transcriptase of retroviruses but they do not contain LTRs (long terminal repeats). Copies of the LINE 1 (L1) family form about 15% of the human genome. The jockey elements of Drosophila are LINEs. Jockey Elements,L1 Elements,LINE-1 Elements,Long Interspersed DNA Sequence Elements,LINE Repeat Sequences,Element, Jockey,Element, L1,Element, LINE-1,Elements, Jockey,Elements, L1,Elements, LINE-1,Jockey Element,L1 Element,LINE 1 Elements,LINE Repeat Sequence,LINE-1 Element,Repeat Sequence, LINE,Repeat Sequences, LINE,Sequence, LINE Repeat,Sequences, LINE Repeat
D020868 Gene Silencing Interruption or suppression of the expression of a gene at transcriptional or translational levels. Gene Inactivation,Inactivation, Gene,Silencing, Gene

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