Isotope labeling and segmental labeling of larger RNAs for NMR structural studies. 2012

Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
Swiss Federal Institute of Technology Zürich, Zürich, Switzerland.

NMR spectroscopy has become substantial in the elucidation of RNA structures and their complexes with other nucleic acids, proteins or small molecules. Almost half of the RNA structures deposited in the Protein Data Bank were determined by NMR spectroscopy, whereas NMR accounts for only 11% for proteins. Recent improvements in isotope labeling of RNA have strongly contributed to the high impact of NMR in RNA structure determination. In this book chapter, we review the advances in isotope labeling of RNA focusing on larger RNAs. We start by discussing several ways for the production and purification of large quantities of pure isotope labeled RNA. We continue by reviewing different strategies for selective deuteration of nucleotides. Finally, we present a comparison of several approaches for segmental isotope labeling of RNA. Selective deuteration of nucleotides in combination with segmental isotope labeling is paving the path for studying RNAs of ever increasing size.

UI MeSH Term Description Entries
D007553 Isotope Labeling Techniques for labeling a substance with a stable or radioactive isotope. It is not used for articles involving labeled substances unless the methods of labeling are substantively discussed. Tracers that may be labeled include chemical substances, cells, or microorganisms. Isotope Labeling, Stable,Isotope-Coded Affinity Tagging,Isotopically-Coded Affinity Tagging,Affinity Tagging, Isotope-Coded,Affinity Tagging, Isotopically-Coded,Isotope Coded Affinity Tagging,Labeling, Isotope,Labeling, Stable Isotope,Stable Isotope Labeling,Tagging, Isotope-Coded Affinity,Tagging, Isotopically-Coded Affinity
D009682 Magnetic Resonance Spectroscopy Spectroscopic method of measuring the magnetic moment of elementary particles such as atomic nuclei, protons or electrons. It is employed in clinical applications such as NMR Tomography (MAGNETIC RESONANCE IMAGING). In Vivo NMR Spectroscopy,MR Spectroscopy,Magnetic Resonance,NMR Spectroscopy,NMR Spectroscopy, In Vivo,Nuclear Magnetic Resonance,Spectroscopy, Magnetic Resonance,Spectroscopy, NMR,Spectroscopy, Nuclear Magnetic Resonance,Magnetic Resonance Spectroscopies,Magnetic Resonance, Nuclear,NMR Spectroscopies,Resonance Spectroscopy, Magnetic,Resonance, Magnetic,Resonance, Nuclear Magnetic,Spectroscopies, NMR,Spectroscopy, MR
D009690 Nucleic Acid Conformation The spatial arrangement of the atoms of a nucleic acid or polynucleotide that results in its characteristic 3-dimensional shape. DNA Conformation,RNA Conformation,Conformation, DNA,Conformation, Nucleic Acid,Conformation, RNA,Conformations, DNA,Conformations, Nucleic Acid,Conformations, RNA,DNA Conformations,Nucleic Acid Conformations,RNA Conformations
D012313 RNA A polynucleotide consisting essentially of chains with a repeating backbone of phosphate and ribose units to which nitrogenous bases are attached. RNA is unique among biological macromolecules in that it can encode genetic information, serve as an abundant structural component of cells, and also possesses catalytic activity. (Rieger et al., Glossary of Genetics: Classical and Molecular, 5th ed) RNA, Non-Polyadenylated,Ribonucleic Acid,Gene Products, RNA,Non-Polyadenylated RNA,Acid, Ribonucleic,Non Polyadenylated RNA,RNA Gene Products,RNA, Non Polyadenylated

Related Publications

Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
August 2008, Nucleic acids research,
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
May 2024, Journal of the American Chemical Society,
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
June 1999, Journal of biomolecular NMR,
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
January 2004, Methods in molecular biology (Clifton, N.J.),
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
January 2010, Journal of biomolecular NMR,
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
April 2012, Journal of biomolecular NMR,
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
March 2013, Chembiochem : a European journal of chemical biology,
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
June 2016, Current opinion in structural biology,
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
January 2015, Chembiochem : a European journal of chemical biology,
Olivier Duss, and Peter J Lukavsky, and Frédéric H-T Allain
August 2002, Journal of the American Chemical Society,
Copied contents to your clipboard!