Halogen bonding (X-bonding): a biological perspective. 2013

Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
Department of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, Colorado 80523-1870, USA.

The concept of the halogen bond (or X-bond) has become recognized as contributing significantly to the specificity in recognition of a large class of halogenated compounds. The interaction is most easily understood as primarily an electrostatically driven molecular interaction, where an electropositive crown, or σ-hole, serves as a Lewis acid to attract a variety of electron-rich Lewis bases, in analogous fashion to a classic hydrogen bonding (H-bond) interaction. We present here a broad overview of X-bonds from the perspective of a biologist who may not be familiar with this recently rediscovered class of interactions and, consequently, may be interested in how they can be applied as a highly directional and specific component of the molecular toolbox. This overview includes a discussion for where X-bonds are found in biomolecular structures, and how their structure-energy relationships are studied experimentally and modeled computationally. In total, our understanding of these basic concepts will allow X-bonds to be incorporated into strategies for the rational design of new halogenated inhibitors against biomolecular targets or toward molecular engineering of new biological-based materials.

UI MeSH Term Description Entries
D008958 Models, Molecular Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures. Molecular Models,Model, Molecular,Molecular Model
D006219 Halogens A family of nonmetallic, generally electronegative, elements that form group 17 (formerly group VIIa) of the periodic table. Halogen,Group 17 Elements,Elements, Group 17
D001665 Binding Sites The parts of a macromolecule that directly participate in its specific combination with another molecule. Combining Site,Binding Site,Combining Sites,Site, Binding,Site, Combining,Sites, Binding,Sites, Combining
D001685 Biological Factors Endogenously synthesized compounds that influence biological processes not otherwise classified under ENZYMES; HORMONES or HORMONE ANTAGONISTS. Biologic Factors,Biological Factor,Factor, Biologic,Factor, Biological,Factors, Biological,Biologic Factor,Factors, Biologic

Related Publications

Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
April 2012, ChemistryOpen,
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
October 2012, Journal of molecular modeling,
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
March 2020, Molecules (Basel, Switzerland),
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
February 2020, Molecules (Basel, Switzerland),
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
July 2013, Physical chemistry chemical physics : PCCP,
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
June 2020, Journal of chemical information and modeling,
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
August 2023, Molecules (Basel, Switzerland),
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
September 2020, Angewandte Chemie (International ed. in English),
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
May 2021, Chemical record (New York, N.Y.),
Matthew R Scholfield, and Crystal M Vander Zanden, and Megan Carter, and P Shing Ho
July 2018, New journal of chemistry = Nouveau journal de chimie,
Copied contents to your clipboard!