The effect of postmortem time on the RNA quality of human ocular tissues. 2013

Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
Department of Cell Biology & Anatomy and The North Texas Eye Research Institute, University of North Texas Health Science Center, Fort Worth, TX, USA.

OBJECTIVE Profiling gene expression in human ocular tissues provides invaluable information for understanding ocular biology and investigating numerous ocular diseases. Accurate measurement of gene expression requires high-quality RNA, which often is a challenge with postmortem ocular tissues. METHODS We examined the effect of various death to preservation (DP) times on the RNA quality of ten different ocular tissues. We used 16 eyes from eight different human donors. The eyes were preserved immediately in RNAlater or preserved after initial storage at 4 °C to create a range of DP times from 2 to 48 h. Ten ocular tissues were dissected from each eye. After total RNA was extracted from each dissected ocular tissue, the RNA integrity number (RIN) was determined using an Agilent Bioanalyzer. RESULTS The RIN values from corneal and trabecular meshwork tissues were significantly (p<0.05) higher than those from the ciliary body at an earlier DP time (<6 h), but were not different among all tissues after 8 h. Interestingly, the RIN values from non-vascularized tissues were significantly (p=0.0002) higher than those from vascularized ocular tissues at early DP times (<6 h). The RIN value from the cornea was significantly (p<0.05) higher at short DP times compared to longer DP times. The RIN values from corneal tissues were significantly correlated to DP time according to regression analysis (p<0.05). CONCLUSIONS In this study, we determined RNA quality from postmortem ocular tissues with various DP times. Our results emphasize the need for rapid preservation and processing of postmortem human donor eye tissues, especially for vascularized ocular tissues.

UI MeSH Term Description Entries
D008297 Male Males
D011180 Postmortem Changes Physiological changes that occur in bodies after death. Adipocere,Algor Mortis,Cruor,Livor Mortis,Change, Postmortem,Changes, Postmortem,Postmortem Change
D005123 Eye The organ of sight constituting a pair of globular organs made up of a three-layered roughly spherical structure specialized for receiving and responding to light. Eyes
D005260 Female Females
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D012313 RNA A polynucleotide consisting essentially of chains with a repeating backbone of phosphate and ribose units to which nitrogenous bases are attached. RNA is unique among biological macromolecules in that it can encode genetic information, serve as an abundant structural component of cells, and also possesses catalytic activity. (Rieger et al., Glossary of Genetics: Classical and Molecular, 5th ed) RNA, Non-Polyadenylated,Ribonucleic Acid,Gene Products, RNA,Non-Polyadenylated RNA,Acid, Ribonucleic,Non Polyadenylated RNA,RNA Gene Products,RNA, Non Polyadenylated
D013997 Time Factors Elements of limited time intervals, contributing to particular results or situations. Time Series,Factor, Time,Time Factor
D014019 Tissue Donors Individuals supplying living tissue, organs, cells, blood or blood components for transfer or transplantation to histocompatible recipients. Organ Donors,Donors,Ovum Donors,Semen Donors,Transplant Donors,Donor,Donor, Organ,Donor, Ovum,Donor, Semen,Donor, Tissue,Donor, Transplant,Donors, Organ,Donors, Ovum,Donors, Semen,Donors, Tissue,Donors, Transplant,Organ Donor,Ovum Donor,Semen Donor,Tissue Donor,Transplant Donor
D014021 Tissue Preservation The process by which a tissue or aggregate of cells is kept alive outside of the organism from which it was derived (i.e., kept from decay by means of a chemical agent, cooling, or a fluid substitute that mimics the natural state within the organism). Preservation, Tissue,Preservations, Tissue,Tissue Preservations

Related Publications

Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
March 2007, International journal of legal medicine,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
August 2005, FASEB journal : official publication of the Federation of American Societies for Experimental Biology,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
February 2008, Experimental and molecular pathology,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
February 2023, Fa yi xue za zhi,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
January 2022, Journal of neuropathology and experimental neurology,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
June 2020, Scientific data,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
February 1972, Schweizerische medizinische Wochenschrift,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
November 2011, Cell and tissue banking,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
February 2008, BMC genomics,
Byung-Jin Kim, and Nicholas Sprehe, and Ashley Morganti, and Robert J Wordinger, and Abbot F Clark
February 2002, Biochimica et biophysica acta,
Copied contents to your clipboard!