Sequential unfolding of beta helical protein by single-molecule atomic force microscopy. 2013

David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
Université catholique de Louvain, Institute of Condensed Matter and Nanosciences, Louvain-la-Neuve, Belgium. david.alsteens@uclouvain.be

The parallel βhelix is a common fold among extracellular proteins, however its mechanical properties remain unexplored. In Gram-negative bacteria, extracellular proteins of diverse functions of the large 'TpsA' family all fold into long βhelices. Here, single-molecule atomic force microscopy and steered molecular dynamics simulations were combined to investigate the mechanical properties of a prototypic TpsA protein, FHA, the major adhesin of Bordetella pertussis. Strong extension forces were required to fully unfold this highly repetitive protein, and unfolding occurred along a stepwise, hierarchical process. Our analyses showed that the extremities of the βhelix unfold early, while central regions of the helix are more resistant to mechanical unfolding. In particular, a mechanically resistant subdomain conserved among TpsA proteins and critical for secretion was identified. This nucleus harbors structural elements packed against the βhelix that might contribute to stabilizing the N-terminal region of FHA. Hierarchical unfolding of the βhelix in response to a mechanical stress may maintain β-helical portions that can serve as templates for regaining the native structure after stress. The mechanical properties uncovered here might apply to many proteins with β-helical or related folds, both in prokaryotes and in eukaryotes, and play key roles in their structural integrity and functions.

UI MeSH Term Description Entries
D008958 Models, Molecular Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures. Molecular Models,Model, Molecular,Molecular Model
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D011489 Protein Denaturation Disruption of the non-covalent bonds and/or disulfide bonds responsible for maintaining the three-dimensional shape and activity of the native protein. Denaturation, Protein,Denaturations, Protein,Protein Denaturations
D011506 Proteins Linear POLYPEPTIDES that are synthesized on RIBOSOMES and may be further modified, crosslinked, cleaved, or assembled into complex proteins with several subunits. The specific sequence of AMINO ACIDS determines the shape the polypeptide will take, during PROTEIN FOLDING, and the function of the protein. Gene Products, Protein,Gene Proteins,Protein,Protein Gene Products,Proteins, Gene
D005964 Glucosyltransferases Enzymes that catalyze the transfer of glucose from a nucleoside diphosphate glucose to an acceptor molecule which is frequently another carbohydrate. EC 2.4.1.-. Glucosyltransferase
D001426 Bacterial Proteins Proteins found in any species of bacterium. Bacterial Gene Products,Bacterial Gene Proteins,Gene Products, Bacterial,Bacterial Gene Product,Bacterial Gene Protein,Bacterial Protein,Gene Product, Bacterial,Gene Protein, Bacterial,Gene Proteins, Bacterial,Protein, Bacterial,Proteins, Bacterial
D017433 Protein Structure, Secondary The level of protein structure in which regular hydrogen-bond interactions within contiguous stretches of polypeptide chain give rise to ALPHA-HELICES; BETA-STRANDS (which align to form BETA-SHEETS), or other types of coils. This is the first folding level of protein conformation. Secondary Protein Structure,Protein Structures, Secondary,Secondary Protein Structures,Structure, Secondary Protein,Structures, Secondary Protein
D056004 Molecular Dynamics Simulation A computer simulation developed to study the motion of molecules over a period of time. Molecular Dynamics Simulations,Molecular Dynamics,Dynamic, Molecular,Dynamics Simulation, Molecular,Dynamics Simulations, Molecular,Dynamics, Molecular,Molecular Dynamic,Simulation, Molecular Dynamics,Simulations, Molecular Dynamics
D058767 Protein Unfolding Conformational transitions of the shape of a protein to various unfolded states. Unfolding, Protein
D018625 Microscopy, Atomic Force A type of scanning probe microscopy in which a probe systematically rides across the surface of a sample being scanned in a raster pattern. The vertical position is recorded as a spring attached to the probe rises and falls in response to peaks and valleys on the surface. These deflections produce a topographic map of the sample. Atomic Force Microscopy,Force Microscopy,Scanning Force Microscopy,Atomic Force Microscopies,Force Microscopies,Force Microscopies, Scanning,Force Microscopy, Scanning,Microscopies, Atomic Force,Microscopies, Force,Microscopies, Scanning Force,Microscopy, Force,Microscopy, Scanning Force,Scanning Force Microscopies

Related Publications

David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
January 2011, Methods in molecular biology (Clifton, N.J.),
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
September 2008, Journal of the American Chemical Society,
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
February 2017, Journal of the American Chemical Society,
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
February 2010, Biophysical journal,
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
February 1997, Science (New York, N.Y.),
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
January 2007, Methods in molecular biology (Clifton, N.J.),
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
March 2019, Archives of biochemistry and biophysics,
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
February 2006, Biophysical journal,
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
July 2011, Analytical biochemistry,
David Alsteens, and Nicolas Martinez, and Marc Jamin, and Françoise Jacob-Dubuisson
January 2009, Annals of the New York Academy of Sciences,
Copied contents to your clipboard!