[Studies on the reaction mechanism of a ribonuclease II from Aspergillus oryzae (author's transl)]. 1975

P M Kaiser, and L Bonacker, and H Witzel, and A Holý

Ribonuclease T2 was isolated from an Aspergillus oryzae extract. In order to define the substrate specificity, the hydrolysis of a series of 2',3'-cyclic nucleotides was measured semiquantitatively. Modifications in all positions of the bases are tolerated, as long as the base stays in the anti conformation or has a chance to return to it; bulky substituents at N-3 of the pyrimidine base lower the rate. So far the conclusion seems justified that the enzyme does not react with the substrates by specific bonds to the base, but rather by hydrophobic binding. The conformation specificity and the pH dependence of the activity support this hypothesis. The pH optima with substrates which may be positively or negatively charged are shifted to pH values at which the substrates are uncharged. This strongly indicates a hydrophobic type of interaction between base and enzyme. From the pH dependence of the kinetic parameters Km and k+2, an enzyme group with a pK of 7 (probably histidine) can be postulated. This group should interact in the protonated form with the phosphate anion. Another B.HB-system (probably two carboxylate groups) seems to be involved in the catalysis step, performing the base catalysis at the 2'-OH group and the proton catalysis at the phosphate oxygen simultaneously.

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D009712 Nucleotides, Cyclic Cyclic Nucleotide,Cyclic Nucleotides,Nucleotide, Cyclic
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D011684 Purine Nucleosides Purines with a RIBOSE attached that can be phosphorylated to PURINE NUCLEOTIDES. Purine Nucleoside,Nucleoside, Purine,Nucleosides, Purine
D011741 Pyrimidine Nucleosides Pyrimidines with a RIBOSE attached that can be phosphorylated to PYRIMIDINE NUCLEOTIDES. Nucleosides, Pyrimidine
D006863 Hydrogen-Ion Concentration The normality of a solution with respect to HYDROGEN ions; H+. It is related to acidity measurements in most cases by pH pH,Concentration, Hydrogen-Ion,Concentrations, Hydrogen-Ion,Hydrogen Ion Concentration,Hydrogen-Ion Concentrations
D006868 Hydrolysis The process of cleaving a chemical compound by the addition of a molecule of water.
D001230 Aspergillus A genus of mitosporic fungi containing about 100 species and eleven different teleomorphs in the family Trichocomaceae.
D001665 Binding Sites The parts of a macromolecule that directly participate in its specific combination with another molecule. Combining Site,Binding Site,Combining Sites,Site, Binding,Site, Combining,Sites, Binding,Sites, Combining
D012260 Ribonucleases Enzymes that catalyze the hydrolysis of ester bonds within RNA. EC 3.1.-. Nucleases, RNA,RNase,Acid Ribonuclease,Alkaline Ribonuclease,Ribonuclease,RNA Nucleases,Ribonuclease, Acid,Ribonuclease, Alkaline

Related Publications

P M Kaiser, and L Bonacker, and H Witzel, and A Holý
July 1971, Biochimica et biophysica acta,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
March 1995, Protein science : a publication of the Protein Society,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
October 1979, Nihon Kyobu Shikkan Gakkai zasshi,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
August 1974, Fukuoka igaku zasshi = Hukuoka acta medica,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
October 1988, European journal of biochemistry,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
December 1980, Revista espanola de fisiologia,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
November 1994, Journal of molecular biology,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
June 1980, Revista espanola de fisiologia,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
August 1975, Archives of biochemistry and biophysics,
P M Kaiser, and L Bonacker, and H Witzel, and A Holý
May 1978, Experientia,
Copied contents to your clipboard!