BIOMAT Database Logo BIOMAT Database Logo

Nucleotide sequence and organization of potato leafroll virus genomic RNA. 1989

F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
Agricultural University Wageningen, Department of Virology, The Netherlands.

The nucleotide sequence of the genomic RNA of potato leafroll virus was determined and its genetic organization deduced. The RNA is 5882 nucleotides long and contains 6 open reading frames (ORFs) encoding proteins of 70, 70, 56, 28, 23 and 17 kDa. The putative genes for the coat protein (23 kDa) and the RNA-dependent RNA polymerase (70 kDa) were identified by interviral amino acid sequence homologies. For expression of the different ORFs, translational frameshift and readthrough events are proposed.

UI MeSH Term Description Entries
D008969 Molecular Sequence Data Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories. Sequence Data, Molecular,Molecular Sequencing Data,Data, Molecular Sequence,Data, Molecular Sequencing,Sequencing Data, Molecular
D008970 Molecular Weight The sum of the weight of all the atoms in a molecule. Molecular Weights,Weight, Molecular,Weights, Molecular
D010942 Plant Viruses Viruses parasitic on plants. Phytophagineae,Plant Virus,Virus, Plant,Viruses, Plant
D002213 Capsid The outer protein protective shell of a virus, which protects the viral nucleic acid. Capsids are composed of repeating units (capsomers or capsomeres) of CAPSID PROTEINS which when assembled together form either an icosahedral or helical shape. Procapsid,Prohead,Capsids,Procapsids,Proheads
D003062 Codon A set of three nucleotides in a protein coding sequence that specifies individual amino acids or a termination signal (CODON, TERMINATOR). Most codons are universal, but some organisms do not produce the transfer RNAs (RNA, TRANSFER) complementary to all codons. These codons are referred to as unassigned codons (CODONS, NONSENSE). Codon, Sense,Sense Codon,Codons,Codons, Sense,Sense Codons
D004247 DNA A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine). DNA, Double-Stranded,Deoxyribonucleic Acid,ds-DNA,DNA, Double Stranded,Double-Stranded DNA,ds DNA
D000595 Amino Acid Sequence The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION. Protein Structure, Primary,Amino Acid Sequences,Sequence, Amino Acid,Sequences, Amino Acid,Primary Protein Structure,Primary Protein Structures,Protein Structures, Primary,Structure, Primary Protein,Structures, Primary Protein
D001483 Base Sequence The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence. DNA Sequence,Nucleotide Sequence,RNA Sequence,DNA Sequences,Base Sequences,Nucleotide Sequences,RNA Sequences,Sequence, Base,Sequence, DNA,Sequence, Nucleotide,Sequence, RNA,Sequences, Base,Sequences, DNA,Sequences, Nucleotide,Sequences, RNA
D012194 RNA-Directed DNA Polymerase An enzyme that synthesizes DNA on an RNA template. It is encoded by the pol gene of retroviruses and by certain retrovirus-like elements. EC 2.7.7.49. DNA Polymerase, RNA-Directed,RNA-Dependent DNA Polymerase,Reverse Transcriptase,RNA Transcriptase,Revertase,DNA Polymerase, RNA Directed,DNA Polymerase, RNA-Dependent,RNA Dependent DNA Polymerase,RNA Directed DNA Polymerase
D012367 RNA, Viral Ribonucleic acid that makes up the genetic material of viruses. Viral RNA

Related Publications

F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
Nucleotide sequence of potato leafroll luteovirus RNA.
May 1989, The Journal of general virology,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
Nucleotide sequence of potato virus Y (N Strain) genomic RNA.
April 1989, The Journal of general virology,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
Nucleotide sequence of the potato leafroll virus coat protein gene.
February 1989, Nucleic acids research,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
[Complete nucleotide sequence of genomic RNA of the potato M-virus].
January 1991, Molekuliarnaia biologiia,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
RNA in potato leafroll virus.
May 1979, FEBS letters,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
Nucleotide sequence of RNA of a Polish isolate of potato leafroll luteovirus.
January 1994, Acta biochimica Polonica,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
The nucleotide sequence of potato virus A genomic RNA and its sequence similarities with other potyviruses.
February 1994, The Journal of general virology,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
The nucleotide sequence of potato virus X RNA.
November 1988, Nucleic acids research,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
The 5'-terminal sequence of potato leafroll virus RNA: evidence of recombination between virus and host RNA.
October 1991, The Journal of general virology,
F van der Wilk, and M J Huisman, and B J Cornelissen, and H Huttinga, and R Goldbach
Nucleotide sequence analysis of the ORF0 region of Potato leafroll virus isolates from Tunisia.
January 2006, Acta virologica,
Copied contents to your clipboard!