Ribonucleotide incorporation by yeast DNA polymerase ζ. 2014

Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.

During replication in yeast, the three B family DNA replicases frequently incorporate ribonucleotides (rNMPs) into DNA, and their presence in the nuclear genome can affect genome stability. This prompted us to examine ribonucleotide incorporation by the fourth B family member, Pol ζ, the enzyme responsible for the majority of damage-induced mutagenesis in eukaryotes. We first show that Pol ζ inserts rNMPs into DNA and can extend primer termini containing 3'-ribonucleotides. We then measure rNMP incorporation by Pol ζ in the presence of its cofactors, RPA, RFC and PCNA and at normal cellular dNTP and rNTP concentrations that exist under unstressed conditions. Under these conditions, Pol ζ stably incorporates one rNMP for every 200-300 dNMPs incorporated, a frequency that is slightly higher than for the high fidelity replicative DNA polymerases. Under damage-induced conditions wherein cellular dNTP concentrations are elevated 5-fold, Pol ζ only incorporates one rNMP per 1300 dNMPs. Functional interaction of Pol ζ with the mutasome assembly factor Rev1 gives comparable rNMP incorporation frequencies. These results suggest that ribonucleotide incorporation into DNA during Pol ζ-mediated mutagenesis in vivo may be rare.

UI MeSH Term Description Entries
D009154 Mutation Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations. Mutations
D009713 Nucleotidyltransferases A class of enzymes that transfers nucleotidyl residues. EC 2.7.7. Nucleotidyltransferase
D003854 Deoxyribonucleotides A purine or pyrimidine base bonded to a DEOXYRIBOSE containing a bond to a phosphate group. Deoxyribonucleotide
D004249 DNA Damage Injuries to DNA that introduce deviations from its normal, intact structure and which may, if left unrepaired, result in a MUTATION or a block of DNA REPLICATION. These deviations may be caused by physical or chemical agents and occur by natural or unnatural, introduced circumstances. They include the introduction of illegitimate bases during replication or by deamination or other modification of bases; the loss of a base from the DNA backbone leaving an abasic site; single-strand breaks; double strand breaks; and intrastrand (PYRIMIDINE DIMERS) or interstrand crosslinking. Damage can often be repaired (DNA REPAIR). If the damage is extensive, it can induce APOPTOSIS. DNA Injury,DNA Lesion,DNA Lesions,Genotoxic Stress,Stress, Genotoxic,Injury, DNA,DNA Injuries
D004259 DNA-Directed DNA Polymerase DNA-dependent DNA polymerases found in bacteria, animal and plant cells. During the replication process, these enzymes catalyze the addition of deoxyribonucleotide residues to the end of a DNA strand in the presence of DNA as template-primer. They also possess exonuclease activity and therefore function in DNA repair. DNA Polymerase,DNA Polymerases,DNA-Dependent DNA Polymerases,DNA Polymerase N3,DNA Dependent DNA Polymerases,DNA Directed DNA Polymerase,DNA Polymerase, DNA-Directed,DNA Polymerases, DNA-Dependent,Polymerase N3, DNA,Polymerase, DNA,Polymerase, DNA-Directed DNA,Polymerases, DNA,Polymerases, DNA-Dependent DNA
D004261 DNA Replication The process by which a DNA molecule is duplicated. Autonomous Replication,Replication, Autonomous,Autonomous Replications,DNA Replications,Replication, DNA,Replications, Autonomous,Replications, DNA
D004271 DNA, Fungal Deoxyribonucleic acid that makes up the genetic material of fungi. Fungal DNA
D012265 Ribonucleotides Nucleotides in which the purine or pyrimidine base is combined with ribose. (Dorland, 28th ed) Ribonucleoside Phosphates,Ribonucleotide,Phosphates, Ribonucleoside
D012441 Saccharomyces cerevisiae A species of the genus SACCHAROMYCES, family Saccharomycetaceae, order Saccharomycetales, known as "baker's" or "brewer's" yeast. The dried form is used as a dietary supplement. Baker's Yeast,Brewer's Yeast,Candida robusta,S. cerevisiae,Saccharomyces capensis,Saccharomyces italicus,Saccharomyces oviformis,Saccharomyces uvarum var. melibiosus,Yeast, Baker's,Yeast, Brewer's,Baker Yeast,S cerevisiae,Baker's Yeasts,Yeast, Baker
D051716 Replication Protein A A single-stranded DNA-binding protein that is found in EUKARYOTIC CELLS. It is required for DNA REPLICATION; DNA REPAIR; and GENETIC RECOMBINATION. Replication Factor A,Replication Factor A Single-Stranded DNA-Binding Protein,DNA Replication Factor A,Single-Strand Binding Protein RP-A,Replication Factor A Single Stranded DNA Binding Protein,Single Strand Binding Protein RP A

Related Publications

Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
October 2013, Cell reports,
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
February 2016, The Journal of biological chemistry,
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
March 2010, Proceedings of the National Academy of Sciences of the United States of America,
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
February 2013, DNA repair,
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
September 2017, Nucleic acids research,
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
May 2015, DNA repair,
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
January 2018, Methods in molecular biology (Clifton, N.J.),
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
December 2014, Biochemistry,
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
July 2012, Proceedings of the National Academy of Sciences of the United States of America,
Alena V Makarova, and Stephanie A Nick McElhinny, and Brian E Watts, and Thomas A Kunkel, and Peter M Burgers
March 2017, Nucleic acids research,
Copied contents to your clipboard!