The presence of zooplankton in drinking water treatment system may cause a negative effect on the aesthetic value of drinking water and may also increase the threat to human health due to they being the carriers of bacteria. Very little research has been done on the effects of copepod inactivation and the mechanisms involved in this process. In a series of bench-scale experiments we used a response surface method to assess the sensitivity of copepod to inactivation when chlorine dioxide (ClO₂) was used as a disinfectant. We also assessed the effects of the ClO₂dosage, exposure time, organic matter concentration and temperature. Results indicated that the inactivation rate improved with increasing dosage, exposure time and temperature, whereas it decreased with increasing organic matter concentration. Copepod inactivation was more sensitive to the ClO₂dose than that to the exposure time, while being maintained at the same Ct-value conditions. The activation energy at different temperatures revealed that the inactivation of copepods with ClO₂was temperature-dependent. The presence of organic matter resulted in a lower available dose as well as a shorter available exposure time, which resulted in a decrease in inactivation efficiency.