Experimental and density functional theory (DFT) studies on the interactions of Ru(II) polypyridyl complexes with the RAN triplex poly(U)˙poly(A)*poly(U). 2014

Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
College of Chemistry, Xiangtan University, Xiangtan 411105, China.

There is renewed interest in investigating triple helices because these novel structures have been implicated as a possible means of controlling cellular processes by endogenous or exogenous mechanisms. Due to the Hoogsteen base pairing, triple helices are, however, thermodynamically less stable than the corresponding duplexes. The poor stability of triple helices limits their practical applications under physiological conditions. In contrast to DNA triple helices, small molecules stabilizing RNA triple helices at present are less well established. Furthermore, most of these studies are limited to organic compounds and, to a far lesser extent, to metal complexes. In this work, two Ru(II) complexes, [Ru(bpy)2(btip)](2+) (Ru1) and [Ru(phen)2(btip)](2+) (Ru2), have been synthesized and characterized. The binding properties of the two metal complexes with the triple RNA poly(U)˙poly(A)*poly(U) were studied by various biophysical and density functional theory methods. The main results obtained here suggest that the slight binding difference in Ru1 and Ru2 may be attributed to the planarity of the intercalative ligand and the LUMO level of Ru(II) complexes. This study further advances our knowledge on the triplex RNA-binding by metal complexes, particularly Ru(II) complexes.

UI MeSH Term Description Entries
D008958 Models, Molecular Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures. Molecular Models,Model, Molecular,Molecular Model
D011131 Polyribonucleotides A group of 13 or more ribonucleotides in which the phosphate residues of each ribonucleotide act as bridges in forming diester linkages between the ribose moieties.
D011725 Pyridines Compounds with a six membered aromatic ring containing NITROGEN. The saturated version is PIPERIDINES.
D012428 Ruthenium A hard, brittle, grayish-white rare earth metal with an atomic symbol Ru, atomic number 44, and atomic weight 101.07. It is used as a catalyst and hardener for PLATINUM and PALLADIUM.

Related Publications

Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
January 2013, Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry,
Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
October 2014, Inorganic chemistry,
Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
August 2019, Journal of inorganic biochemistry,
Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
October 2014, Molecular bioSystems,
Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
September 2023, Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry,
Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
August 2019, Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry,
Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
August 2023, Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry,
Hong Zhang, and Xuewen Liu, and Xiaojun He, and Ying Liu, and Lifeng Tan
July 2017, Inorganic chemistry,
Copied contents to your clipboard!