The nature of protein folding pathways. 2014

S Walter Englander, and Leland Mayne
Johnson Research Foundation, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104 engl@mail.med.upenn.edu.

How do proteins fold, and why do they fold in that way? This Perspective integrates earlier and more recent advances over the 50-y history of the protein folding problem, emphasizing unambiguously clear structural information. Experimental results show that, contrary to prior belief, proteins are multistate rather than two-state objects. They are composed of separately cooperative foldon building blocks that can be seen to repeatedly unfold and refold as units even under native conditions. Similarly, foldons are lost as units when proteins are destabilized to produce partially unfolded equilibrium molten globules. In kinetic folding, the inherently cooperative nature of foldons predisposes the thermally driven amino acid-level search to form an initial foldon and subsequent foldons in later assisted searches. The small size of foldon units, ∼ 20 residues, resolves the Levinthal time-scale search problem. These microscopic-level search processes can be identified with the disordered multitrack search envisioned in the "new view" model for protein folding. Emergent macroscopic foldon-foldon interactions then collectively provide the structural guidance and free energy bias for the ordered addition of foldons in a stepwise pathway that sequentially builds the native protein. These conclusions reconcile the seemingly opposed new view and defined pathway models; the two models account for different stages of the protein folding process. Additionally, these observations answer the "how" and the "why" questions. The protein folding pathway depends on the same foldon units and foldon-foldon interactions that construct the native structure.

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D008956 Models, Chemical Theoretical representations that simulate the behavior or activity of chemical processes or phenomena; includes the use of mathematical equations, computers, and other electronic equipment. Chemical Models,Chemical Model,Model, Chemical
D017510 Protein Folding Processes involved in the formation of TERTIARY PROTEIN STRUCTURE. Protein Folding, Globular,Folding, Globular Protein,Folding, Protein,Foldings, Globular Protein,Foldings, Protein,Globular Protein Folding,Globular Protein Foldings,Protein Foldings,Protein Foldings, Globular

Related Publications

S Walter Englander, and Leland Mayne
February 1995, Journal of biomolecular NMR,
S Walter Englander, and Leland Mayne
January 1993, Annual review of biochemistry,
S Walter Englander, and Leland Mayne
August 2004, Bioinformatics (Oxford, England),
S Walter Englander, and Leland Mayne
February 2011, Journal of biomolecular structure & dynamics,
S Walter Englander, and Leland Mayne
October 1992, Journal of molecular biology,
S Walter Englander, and Leland Mayne
January 1993, Proceedings of the National Academy of Sciences of the United States of America,
S Walter Englander, and Leland Mayne
September 2006, Physical review letters,
S Walter Englander, and Leland Mayne
April 1995, Philosophical transactions of the Royal Society of London. Series B, Biological sciences,
S Walter Englander, and Leland Mayne
January 2008, Annual review of cell and developmental biology,
S Walter Englander, and Leland Mayne
January 1984, Advances in biophysics,
Copied contents to your clipboard!