Voltage-gated Ca channels are very efficient pores: even while exhibiting strong ionic selectivity, they are highly permeant to divalent cations. Studies of the mechanism of selectivity and ion permeation have demonstrated that whole-cell Ca channel current in mixtures of Ca and Ba ions can be smaller than with equimolar concentrations of either ion alone. This anomalous mole fraction effect (AMFE) has provided an important impetus for proposed mechanisms of ion selectivity and permeation that invoke multiple ion binding sites. However, recordings of unitary L-type Ca currents did not demonstrate the AMFE [Marban, E. & Yue, D.T. (1988) Biophys. J. 55, 594a (abstr.)], raising doubts about whether it is an expression of ion permeation through open Ca channels. We have made patch-clamp recordings from single L-type Ca channels in PC-12 pheochromocytoma cells. Our results demonstrate a significant AMFE at the single-channel level but also indicate that the AMFE can only be found under restrictive conditions of permeant ion concentration and membrane potential. While the AMFE is clear at 0 mV when permeant ions are present at 10 mM, it is not evident when the divalent cation concentration is increased to 110 mM or the membrane potential is hyperpolarized to -40 mV. We compared our experimental observations with predictions of a single-file, two-binding-site model of the Ca channel. The model accounts for our experimental results. It predicts an AMFE under conditions that favor ion-ion interactions, as long as the outer binding site is not saturated due to high permeant ion concentration or negative membrane potential.