mRNAs that specifically interact with eukaryotic ribosomal subunits. 2015

Jules Deforges, and Nicolas Locker, and Bruno Sargueil
CNRS UMR8015, laboratoire de cristallographie et RMN biologiques, France; Université Paris Descartes, 4 avenue de l'observatoire, Paris Cedex 06, 75270, France.

The accuracy of start codon selection is determined by the translation initiation process. In prokaryotes the initiation step on most mRNAs relies on recruitment of the small ribosomal subunit onto the initiation codon by base pairing between the mRNA and the 16S rRNA. Eukaryotes have evolved a complex molecular machinery involving at least 11 initiation factors, and mRNAs do not directly recruit the small ribosomal subunit. Instead the initiation complex is recruited to the 5' end of the mRNA through a complex protein network including eIF4E that interacts with the 5' cap structure and poly-A binding protein that interacts with the 3'end. However, some viral and cellular mRNAs are able to escape this pathway by internal recruitment of one or several components of the translation machinery. Here we review those eukaryotic mRNAs that have been reported to directly recruit the 40S ribosomal subunit internally. In the well characterized cases of viral IRESes, a specific RNA structure is involved in this process, and in addition to recruitment of the ribosome, the mRNA also manipulates the ribosome structure to stimulate the first translocation step. We also review recently described IRES/ribosome interactions in cases where the molecular mechanism leading to translation initiation has yet to be described. Finally we evaluate the possibility that mRNA may recruit the 40S ribosomal subunit through base pairing with the 18S rRNA.

UI MeSH Term Description Entries
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D000818 Animals Unicellular or multicellular, heterotrophic organisms, that have sensation and the power of voluntary movement. Under the older five kingdom paradigm, Animalia was one of the kingdoms. Under the modern three domain model, Animalia represents one of the many groups in the domain EUKARYOTA. Animal,Metazoa,Animalia
D001665 Binding Sites The parts of a macromolecule that directly participate in its specific combination with another molecule. Combining Site,Binding Site,Combining Sites,Site, Binding,Site, Combining,Sites, Binding,Sites, Combining
D012333 RNA, Messenger RNA sequences that serve as templates for protein synthesis. Bacterial mRNAs are generally primary transcripts in that they do not require post-transcriptional processing. Eukaryotic mRNA is synthesized in the nucleus and must be exported to the cytoplasm for translation. Most eukaryotic mRNAs have a sequence of polyadenylic acid at the 3' end, referred to as the poly(A) tail. The function of this tail is not known for certain, but it may play a role in the export of mature mRNA from the nucleus as well as in helping stabilize some mRNA molecules by retarding their degradation in the cytoplasm. Messenger RNA,Messenger RNA, Polyadenylated,Poly(A) Tail,Poly(A)+ RNA,Poly(A)+ mRNA,RNA, Messenger, Polyadenylated,RNA, Polyadenylated,mRNA,mRNA, Non-Polyadenylated,mRNA, Polyadenylated,Non-Polyadenylated mRNA,Poly(A) RNA,Polyadenylated mRNA,Non Polyadenylated mRNA,Polyadenylated Messenger RNA,Polyadenylated RNA,RNA, Polyadenylated Messenger,mRNA, Non Polyadenylated
D012343 RNA, Transfer The small RNA molecules, 73-80 nucleotides long, that function during translation (TRANSLATION, GENETIC) to align AMINO ACIDS at the RIBOSOMES in a sequence determined by the mRNA (RNA, MESSENGER). There are about 30 different transfer RNAs. Each recognizes a specific CODON set on the mRNA through its own ANTICODON and as aminoacyl tRNAs (RNA, TRANSFER, AMINO ACYL), each carries a specific amino acid to the ribosome to add to the elongating peptide chains. Suppressor Transfer RNA,Transfer RNA,tRNA,RNA, Transfer, Suppressor,Transfer RNA, Suppressor,RNA, Suppressor Transfer
D014176 Protein Biosynthesis The biosynthesis of PEPTIDES and PROTEINS on RIBOSOMES, directed by MESSENGER RNA, via TRANSFER RNA that is charged with standard proteinogenic AMINO ACIDS. Genetic Translation,Peptide Biosynthesis, Ribosomal,Protein Translation,Translation, Genetic,Protein Biosynthesis, Ribosomal,Protein Synthesis, Ribosomal,Ribosomal Peptide Biosynthesis,mRNA Translation,Biosynthesis, Protein,Biosynthesis, Ribosomal Peptide,Biosynthesis, Ribosomal Protein,Genetic Translations,Ribosomal Protein Biosynthesis,Ribosomal Protein Synthesis,Synthesis, Ribosomal Protein,Translation, Protein,Translation, mRNA,mRNA Translations
D054682 Ribosome Subunits, Small, Eukaryotic The small subunit of the 80s ribosome of eukaryotes. It is composed of the 18S RIBOSOMAL RNA and 32 different RIBOSOMAL PROTEINS. 40S Ribosomal Subunits,40S Ribosome Subunits,Eukaryotic Small Ribosomal Subunits,Eukaryotic Small Ribosome Subunits,Ribosomal Subunits, 40S,Ribosomal Subunits, Small, Eukaryotic,Ribosome Subunits, 40S,Small Ribosomal Subunits, Eukaryotic,Small Ribosome Subunits, Eukaryotic,40S Ribosomal Subunit,40S Ribosome Subunit,Ribosomal Subunit, 40S,Ribosome Subunit, 40S,Subunit, 40S Ribosomal,Subunit, 40S Ribosome,Subunits, 40S Ribosomal,Subunits, 40S Ribosome
D054683 Ribosome Subunits, Large, Eukaryotic The large subunit of the 80s ribosome of eukaryotes. It is composed of the 28S RIBOSOMAL RNA, the 5.8S RIBOSOMAL RNA, the 5S RIBOSOMAL RNA, and about 50 different RIBOSOMAL PROTEINS. 60S Ribosomal Subunits,60S Ribosome Subunits,Eukaryotic Large Ribosomal Subunits,Eukaryotic Large Ribosome Subunits,Large Ribosomal Subunits, Eukaryotic,Large Ribosome Subunits, Eukaryotic,Ribosomal Subunits, 60S,Ribosomal Subunits, Large, Eukaryotic,Ribosome Subunits, 60S,60S Ribosomal Subunit,60S Ribosome Subunit,Ribosomal Subunit, 60S,Ribosome Subunit, 60S,Subunit, 60S Ribosomal,Subunit, 60S Ribosome,Subunits, 60S Ribosomal,Subunits, 60S Ribosome
D034443 RNA Transport The process of moving specific RNA molecules from one cellular compartment or region to another by various sorting and transport mechanisms. Messenger RNA Localization Processes, Cellular,Messenger RNA Sorting,RNA Localization Processes, Cellular,RNA Sorting,Ribonucleic Acid Transport,mRNA Localization Processes, Cellular,mRNA Sorting,Acid Transport, Ribonucleic,RNA Sorting, Messenger,Sorting, Messenger RNA,Sorting, RNA,Sorting, mRNA,Transport, RNA,Transport, Ribonucleic Acid

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