Computational Modeling of Single Neuron Extracellular Electric Potentials and Network Local Field Potentials using LFPsim. 2016

Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham (Amrita University) Amritapuri, India.

Local Field Potentials (LFPs) are population signals generated by complex spatiotemporal interaction of current sources and dipoles. Mathematical computations of LFPs allow the study of circuit functions and dysfunctions via simulations. This paper introduces LFPsim, a NEURON-based tool for computing population LFP activity and single neuron extracellular potentials. LFPsim was developed to be used on existing cable compartmental neuron and network models. Point source, line source, and RC based filter approximations can be used to compute extracellular activity. As a demonstration of efficient implementation, we showcase LFPs from mathematical models of electrotonically compact cerebellum granule neurons and morphologically complex neurons of the neocortical column. LFPsim reproduced neocortical LFP at 8, 32, and 56 Hz via current injection, in vitro post-synaptic N2a, N2b waves and in vivo T-C waves in cerebellum granular layer. LFPsim also includes a simulation of multi-electrode array of LFPs in network populations to aid computational inference between biophysical activity in neural networks and corresponding multi-unit activity resulting in extracellular and evoked LFP signals.

UI MeSH Term Description Entries

Related Publications

Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
November 2014, Nature communications,
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
December 2016, Cerebral cortex (New York, N.Y. : 1991),
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
January 2017, Frontiers in computational neuroscience,
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
October 2007, Magnetic resonance imaging,
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
October 2017, Journal of neuroscience methods,
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
September 2020, The Journal of physiology,
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
March 2004, Biophysical journal,
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
January 1974, Ceskoslovenska fysiologie,
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
February 2015, Journal of computational neuroscience,
Harilal Parasuram, and Bipin Nair, and Egidio D'Angelo, and Michael Hines, and Giovanni Naldi, and Shyam Diwakar
October 2006, Biophysical journal,
Copied contents to your clipboard!