Dynamics of IRES-mediated translation. 2017

Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
Department of Chemical and Systems Biology, Stanford University, Stanford, CA 94305, USA.

Viral internal ribosome entry sites (IRESs) are unique RNA elements, which use stable and dynamic RNA structures to recruit ribosomes and drive protein synthesis. IRESs overcome the high complexity of the canonical eukaryotic translation initiation pathway, often functioning with a limited set of eukaryotic initiation factors. The simplest types of IRESs are typified by the cricket paralysis virus intergenic region (CrPV IGR) and hepatitis C virus (HCV) IRESs, both of which independently form high-affinity complexes with the small (40S) ribosomal subunit and bypass the molecular processes of cap-binding and scanning. Owing to their simplicity and ribosomal affinity, the CrPV and HCV IRES have been important models for structural and functional studies of the eukaryotic ribosome during initiation, serving as excellent targets for recent technological breakthroughs in cryogenic electron microscopy (cryo-EM) and single-molecule analysis. High-resolution structural models of ribosome : IRES complexes, coupled with dynamics studies, have clarified decades of biochemical research and provided an outline of the conformational and compositional trajectory of the ribosome during initiation. Here we review recent progress in the study of HCV- and CrPV-type IRESs, highlighting important structural and dynamics insights and the synergy between cryo-EM and single-molecule studies.This article is part of the themed issue 'Perspectives on the ribosome'.

UI MeSH Term Description Entries
D008968 Molecular Conformation The characteristic three-dimensional shape of a molecule. Molecular Configuration,3D Molecular Structure,Configuration, Molecular,Molecular Structure, Three Dimensional,Three Dimensional Molecular Structure,3D Molecular Structures,Configurations, Molecular,Conformation, Molecular,Conformations, Molecular,Molecular Configurations,Molecular Conformations,Molecular Structure, 3D,Molecular Structures, 3D,Structure, 3D Molecular,Structures, 3D Molecular
D000067556 Internal Ribosome Entry Sites Sequences within MESSENGER RNA that enable PROTEIN TRANSLATION INITIATION independent of 5' CAPPED RNA. Internal Ribosome Entry Site
D000072760 Single Molecule Imaging High resolution imaging techniques that allow visualization of individual molecules of proteins, lipids, or nucleic acids within cells or tissues. Single Molecule Analysis,Single Molecule Tracking,Single Particle Analysis,Single Particle Imaging,Single Particle Microscopy,Single Particle Spectroscopy,Single Particle Tracking,Single Molecule Microscopy,Single Molecule Spectroscopy,Analyses, Single Particle,Analysis, Single Molecule,Analysis, Single Particle,Imaging, Single Molecule,Imaging, Single Particle,Microscopies, Single Particle,Microscopy, Single Molecule,Microscopy, Single Particle,Particle Tracking, Single,Single Molecule Analyses,Single Particle Analyses,Single Particle Microscopies,Single Particle Spectroscopies,Single Particle Trackings,Spectroscopy, Single Molecule,Spectroscopy, Single Particle,Tracking, Single Molecule,Tracking, Single Particle
D012367 RNA, Viral Ribonucleic acid that makes up the genetic material of viruses. Viral RNA
D014176 Protein Biosynthesis The biosynthesis of PEPTIDES and PROTEINS on RIBOSOMES, directed by MESSENGER RNA, via TRANSFER RNA that is charged with standard proteinogenic AMINO ACIDS. Genetic Translation,Peptide Biosynthesis, Ribosomal,Protein Translation,Translation, Genetic,Protein Biosynthesis, Ribosomal,Protein Synthesis, Ribosomal,Ribosomal Peptide Biosynthesis,mRNA Translation,Biosynthesis, Protein,Biosynthesis, Ribosomal Peptide,Biosynthesis, Ribosomal Protein,Genetic Translations,Ribosomal Protein Biosynthesis,Ribosomal Protein Synthesis,Synthesis, Ribosomal Protein,Translation, Protein,Translation, mRNA,mRNA Translations
D016174 Hepacivirus A genus of FLAVIVIRIDAE causing parenterally-transmitted HEPATITIS C which is associated with transfusions and drug abuse. Hepatitis C virus is the type species. Hepatitis C virus,Hepatitis C-Like Viruses,Hepaciviruses,Hepatitis C Like Viruses,Hepatitis C viruses,Hepatitis C-Like Virus
D056629 Dicistroviridae A family of invertebrate RNA viruses in the order Picornavirales. IAPVOB,Israeli acute paralysis virus of bees,Cripavirus,Israeli acute paralysis virus,Cripaviruses
D020285 Cryoelectron Microscopy Electron microscopy involving rapid freezing of the samples. The imaging of frozen-hydrated molecules and organelles permits the best possible resolution closest to the living state, free of chemical fixatives or stains. Electron Cryomicroscopy,Cryo-electron Microscopy,Cryo electron Microscopy,Cryo-electron Microscopies,Cryoelectron Microscopies,Cryomicroscopies, Electron,Cryomicroscopy, Electron,Electron Cryomicroscopies,Microscopies, Cryo-electron,Microscopies, Cryoelectron,Microscopy, Cryo-electron,Microscopy, Cryoelectron

Related Publications

Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
January 2023, Biochemical and biophysical research communications,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
January 2015, Cancer biology & therapy,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
November 2014, Cell,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
June 2006, Biology of the cell,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
October 2004, Cell,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
November 2016, RNA biology,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
July 2012, Gene,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
October 2025, International journal of molecular sciences,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
June 2005, Cell death and differentiation,
Alex G Johnson, and Rosslyn Grosely, and Alexey N Petrov, and Joseph D Puglisi
January 2008, Biology of the cell,
Copied contents to your clipboard!