Effect of directional pulling on mechanical protein degradation by ATP-dependent proteolytic machines. 2017

Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.

AAA+ proteases and remodeling machines couple hydrolysis of ATP to mechanical unfolding and translocation of proteins following recognition of sequence tags called degrons. Here, we use single-molecule optical trapping to determine the mechanochemistry of two AAA+ proteases, Escherichia coli ClpXP and ClpAP, as they unfold and translocate substrates containing multiple copies of the titinI27 domain during degradation initiated from the N terminus. Previous studies characterized degradation of related substrates with C-terminal degrons. We find that ClpXP and ClpAP unfold the wild-type titinI27 domain and a destabilized variant far more rapidly when pulling from the N terminus, whereas translocation speed is reduced only modestly in the N-to-C direction. These measurements establish the role of directionality in mechanical protein degradation, show that degron placement can change whether unfolding or translocation is rate limiting, and establish that one or a few power strokes are sufficient to unfold some protein domains.

UI MeSH Term Description Entries

Related Publications

Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
January 2008, Biomeditsinskaia khimiia,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
February 2006, Nutrition in clinical practice : official publication of the American Society for Parenteral and Enteral Nutrition,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
December 2003, BioEssays : news and reviews in molecular, cellular and developmental biology,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
September 2017, Proceedings of the National Academy of Sciences of the United States of America,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
March 1984, Proceedings of the National Academy of Sciences of the United States of America,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
October 1997, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
April 2009, The Journal of chemical physics,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
April 1973, Nature: New biology,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
August 1996, Biochemistry,
Adrian O Olivares, and Hema Chandra Kotamarthi, and Benjamin J Stein, and Robert T Sauer, and Tania A Baker
January 1998, The Journal of biological chemistry,
Copied contents to your clipboard!