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An Overlooked Paleotetraploidization in Cucurbitaceae. 2018
Jinpeng Wang, and
Pengchuan Sun, and
Yuxian Li, and
Yinzhe Liu, and
Nanshan Yang, and
Jigao Yu, and
Xuelian Ma, and
Sangrong Sun, and
Ruiyan Xia, and
Xiaojian Liu, and
Dongcen Ge, and
Sainan Luo, and
Yinmeng Liu, and
Youting Kong, and
Xiaobo Cui, and
Tianyu Lei, and
Li Wang, and
Zhenyi Wang, and
Weina Ge, and
Lan Zhang, and
Xiaoming Song, and
Min Yuan, and
Di Guo, and
Dianchuan Jin, and
Wei Chen, and
Yuxin Pan, and
Tao Liu, and
Guixian Yang, and
Yue Xiao, and
Jinshuai Sun, and
Cong Zhang, and
Zhibo Li, and
Haiqing Xu, and
Xueqian Duan, and
Shaoqi Shen, and
Zhonghua Zhang, and
Sanwen Huang, and
Xiyin Wang
School of Life Sciences, North China University of Science and Technology, Tangshan, Hebei, China.
Cucurbitaceae plants are of considerable biological and economic importance, and genomes of cucumber, watermelon, and melon have been sequenced. However, a comparative genomics exploration of their genome structures and evolution has not been available. Here, we aimed at performing a hierarchical inference of genomic homology resulted from recursive paleopolyploidizations. Unexpectedly, we found that, shortly after a core-eudicot-common hexaploidy, a cucurbit-common tetraploidization (CCT) occurred, overlooked by previous reports. Moreover, we characterized gene loss (and retention) after these respective events, which were significantly unbalanced between inferred subgenomes, and between plants after their split. The inference of a dominant subgenome and a sensitive one suggested an allotetraploid nature of the CCT. Besides, we found divergent evolutionary rates among cucurbits, and after doing rate correction, we dated the CCT to be 90-102 Ma, likely common to all Cucurbitaceae plants, showing its important role in the establishment of the plant family.
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