Biomaterial Database

FT Modulates Genome-Wide DNA-Binding of the bZIP Transcription Factor FD. 2019

Silvio Collani, and Manuela Neumann, and Levi Yant, and Markus Schmid

Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-901 87 Umeå, Sweden.

The transition to flowering is a crucial step in the plant life cycle that is controlled by multiple endogenous and environmental cues, including hormones, sugars, temperature, and photoperiod. Permissive photoperiod induces the expression of FLOWERING LOCUS T (FT) in the phloem companion cells of leaves. The FT protein then acts as a florigen that is transported to the shoot apical meristem, where it physically interacts with the Basic Leucine Zipper Domain transcription factor FD and 14-3-3 proteins. However, despite the importance of FD in promoting flowering, its direct transcriptional targets are largely unknown. Here, we combined chromatin immunoprecipitation sequencing and RNA sequencing to identify targets of FD at the genome scale and assessed the contribution of FT to DNA binding. We further investigated the ability of FD to form protein complexes with FT and TERMINAL FLOWER1 through interaction with 14-3-3 proteins. Importantly, we observed direct binding of FD to targets involved in several aspects of plant development. These target genes were previously unknown to be directly related to the regulation of flowering time. Our results confirm FD as a central regulator of floral transition at the shoot meristem and provide evidence for crosstalk between the regulation of flowering and other signaling pathways, such as pathways involved in hormone signaling.

UI	MeSH Term	Description	Entries
D009154	Mutation	Any detectable and heritable change in the genetic material that causes a change in the GENOTYPE and which is transmitted to daughter cells and to succeeding generations.	Mutations
D010766	Phosphorylation	The introduction of a phosphoryl group into a compound through the formation of an ester bond between the compound and a phosphorus moiety.	Phosphorylations
D014157	Transcription Factors	Endogenous substances, usually proteins, which are effective in the initiation, stimulation, or termination of the genetic transcription process.	Transcription Factor,Factor, Transcription,Factors, Transcription
D017360	Arabidopsis	A plant genus of the family BRASSICACEAE that contains ARABIDOPSIS PROTEINS and MADS DOMAIN PROTEINS. The species A. thaliana is used for experiments in classical plant genetics as well as molecular genetic studies in plant physiology, biochemistry, and development.	Arabidopsis thaliana,Cress, Mouse-ear,A. thaliana,A. thalianas,Arabidopses,Arabidopsis thalianas,Cress, Mouse ear,Cresses, Mouse-ear,Mouse-ear Cress,Mouse-ear Cresses,thaliana, A.,thaliana, Arabidopsis,thalianas, A.
D017440	Photoperiod	The time period of daily exposure that an organism receives from daylight or artificial light. It is believed that photoperiodic responses may affect the control of energy balance and thermoregulation.	Dark-Light Cycle,Daylight Cycle,Light Cycle,Light-Dark Cycle,Cycle, Dark-Light,Cycle, Daylight,Cycle, Light,Cycle, Light-Dark,Cycles, Dark-Light,Cycles, Daylight,Cycles, Light,Cycles, Light-Dark,Dark Light Cycle,Dark-Light Cycles,Daylight Cycles,Light Cycles,Light Dark Cycle,Light-Dark Cycles,Photoperiods
D047369	Chromatin Immunoprecipitation	A technique for identifying specific DNA sequences that are bound, in vivo, to proteins of interest. It involves formaldehyde fixation of CHROMATIN to crosslink the DNA-BINDING PROTEINS to the DNA. After shearing the DNA into small fragments, specific DNA-protein complexes are isolated by immunoprecipitation with protein-specific ANTIBODIES. Then, the DNA isolated from the complex can be identified by PCR amplification and sequencing.	Immunoprecipitation, Chromatin
D049488	Phosphatidylethanolamine Binding Protein	A ubiquitously found basic protein that binds to phosphatidylethanolamine and NUCLEOTIDES. It is an endogenous inhibitor of RAF KINASES and may play a role in regulating SIGNAL TRANSDUCTION. Phosphatidylethanolamine-binding protein is the precursor of hippocampal cholinergic neurostimulating peptide, which is cleaved from the N-terminal region of the protein.	HCNP Precursor Protein,Hippocampal Cholinergic Neurostimulating Peptide Precursor,Phosphatidylethanolamine-Binding Protein,Raf Kinase Inhibitor Protein
D050976	Basic-Leucine Zipper Transcription Factors	A large superfamily of transcription factors that contain a region rich in BASIC AMINO ACID residues followed by a LEUCINE ZIPPER domain.	Basic-Leucine Zipper Transcription Factor,GBF bZIP Transcription Factor,bZIP G-Box Binding Factor,bZIP G-Box Binding Factors,bZIP Protein,bZIP Transcription Factor,GBF bZIP Transcription Factors,bZIP Proteins,bZIP Transcription Factors,Basic Leucine Zipper Transcription Factor,Basic Leucine Zipper Transcription Factors,Factor, bZIP Transcription,Protein, bZIP,Transcription Factor, bZIP,Transcription Factors, bZIP,bZIP G Box Binding Factor,bZIP G Box Binding Factors
D018506	Gene Expression Regulation, Plant	Any of the processes by which nuclear, cytoplasmic, or intercellular factors influence the differential control of gene action in plants.	Plant Gene Expression Regulation,Regulation of Gene Expression, Plant,Regulation, Gene Expression, Plant
D018519	Meristem	A group of plant cells that are capable of dividing infinitely and whose main function is the production of new growth at the growing tip of a root or stem. (From Concise Dictionary of Biology, 1990)	Root Tip,Meristems,Root Tips,Tip, Root,Tips, Root