Structure determination of a new fluorescent tricyclic nucleoside from archaebacterial tRNA. 1987

J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter

A highly fluorescent nucleoside was detected in enzymatic digests of the extremely thermophilic archaebacterium Sulfolobus solfataricus by combined liquid chromatography-mass spectrometry (LC/MS). Following isolation, the structure was determined primarily by mass spectrometry, to be 3-(beta-D-ribofuranosyl)-4,9-dihydro-4,6,7-trimethyl-9-oxoimidazo[ 1, 2-a]purine (mimG), a new derivative of the Y (wye) nucleoside. The structural assignment was verified by comparison of the base released by acid hydrolysis with the corresponding synthetic base, using mass spectrometry, chromatography, and UV absorption and fluorescence properties. Nucleoside mimG was also detected by LC/MS in hydrolysates of the thermophiles Thermoproteus neutrophilus and Pyrodictium occultum. These results constitute the first finding of a member of the hypermodified Y family of nucleosides in archaebacteria.

UI MeSH Term Description Entries
D002853 Chromatography, Liquid Chromatographic techniques in which the mobile phase is a liquid. Liquid Chromatography
D006151 Guanosine A purine nucleoside that has guanine linked by its N9 nitrogen to the C1 carbon of ribose. It is a component of ribonucleic acid and its nucleotides play important roles in metabolism. (From Dorland, 28th ed)
D001105 Archaea One of the three domains of life (the others being BACTERIA and Eukarya), formerly called Archaebacteria under the taxon Bacteria, but now considered separate and distinct. They are characterized by: (1) the presence of characteristic tRNAs and ribosomal RNAs; (2) the absence of peptidoglycan cell walls; (3) the presence of ether-linked lipids built from branched-chain subunits; and (4) their occurrence in unusual habitats. While archaea resemble bacteria in morphology and genomic organization, they resemble eukarya in their method of genomic replication. The domain contains at least four kingdoms: CRENARCHAEOTA; EURYARCHAEOTA; NANOARCHAEOTA; and KORARCHAEOTA. Archaebacteria,Archaeobacteria,Archaeon,Archebacteria
D001419 Bacteria One of the three domains of life (the others being Eukarya and ARCHAEA), also called Eubacteria. They are unicellular prokaryotic microorganisms which generally possess rigid cell walls, multiply by cell division, and exhibit three principal forms: round or coccal, rodlike or bacillary, and spiral or spirochetal. Bacteria can be classified by their response to OXYGEN: aerobic, anaerobic, or facultatively anaerobic; by the mode by which they obtain their energy: chemotrophy (via chemical reaction) or PHOTOTROPHY (via light reaction); for chemotrophs by their source of chemical energy: CHEMOLITHOTROPHY (from inorganic compounds) or chemoorganotrophy (from organic compounds); and by their source for CARBON; NITROGEN; etc.; HETEROTROPHY (from organic sources) or AUTOTROPHY (from CARBON DIOXIDE). They can also be classified by whether or not they stain (based on the structure of their CELL WALLS) with CRYSTAL VIOLET dye: gram-negative or gram-positive. Eubacteria
D012343 RNA, Transfer The small RNA molecules, 73-80 nucleotides long, that function during translation (TRANSLATION, GENETIC) to align AMINO ACIDS at the RIBOSOMES in a sequence determined by the mRNA (RNA, MESSENGER). There are about 30 different transfer RNAs. Each recognizes a specific CODON set on the mRNA through its own ANTICODON and as aminoacyl tRNAs (RNA, TRANSFER, AMINO ACYL), each carries a specific amino acid to the ribosome to add to the elongating peptide chains. Suppressor Transfer RNA,Transfer RNA,tRNA,RNA, Transfer, Suppressor,Transfer RNA, Suppressor,RNA, Suppressor Transfer
D013045 Species Specificity The restriction of a characteristic behavior, anatomical structure or physical system, such as immune response; metabolic response, or gene or gene variant to the members of one species. It refers to that property which differentiates one species from another but it is also used for phylogenetic levels higher or lower than the species. Species Specificities,Specificities, Species,Specificity, Species
D013058 Mass Spectrometry An analytical method used in determining the identity of a chemical based on its mass using mass analyzers/mass spectrometers. Mass Spectroscopy,Spectrometry, Mass,Spectroscopy, Mass,Spectrum Analysis, Mass,Analysis, Mass Spectrum,Mass Spectrum Analysis,Analyses, Mass Spectrum,Mass Spectrum Analyses,Spectrum Analyses, Mass

Related Publications

J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
April 1982, The Journal of biological chemistry,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
March 1972, Biochemical and biophysical research communications,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
January 1985, Journal of chromatography,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
April 2002, Biochemistry,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
December 1999, The Journal of biological chemistry,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
April 2004, Proceedings of the National Academy of Sciences of the United States of America,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
November 1999, Proceedings of the National Academy of Sciences of the United States of America,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
November 1990, Seikagaku. The Journal of Japanese Biochemical Society,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
January 1983, Nucleic acids symposium series,
J A McCloskey, and P F Crain, and C G Edmonds, and R Gupta, and T Hashizume, and D W Phillipson, and K O Stetter
November 2001, Journal of medicinal chemistry,
Copied contents to your clipboard!