Hereditary tyrosinemia type I-associated mutations in fumarylacetoacetate hydrolase reduce the enzyme stability and increase its aggregation rate. 2019

Iratxe Macias, and Ana Laín, and Ganeko Bernardo-Seisdedos, and David Gil, and Esperanza Gonzalez, and Juan M Falcon-Perez, and Oscar Millet
Protein Stability and Inherited Disease Laboratory, CIC bioGUNE, Bizkaia Technology Park, 48160 Derio, Bizkaia, Spain.

More than 100 mutations in the gene encoding fumarylacetoacetate hydrolase (FAH) cause hereditary tyrosinemia type I (HT1), a metabolic disorder characterized by elevated blood levels of tyrosine. Some of these mutations are known to decrease FAH catalytic activity, but the mechanisms of FAH mutation-induced pathogenicity remain poorly understood. Here, using diffusion ordered NMR spectroscopy, cryo-EM, and CD analyses, along with site-directed mutagenesis, enzymatic assays, and molecular dynamics simulations, we investigated the putative role of thermodynamic and kinetic stability in WT FAH and a representative set of 19 missense mutations identified in individuals with HT1. We found that at physiological temperatures and concentrations, WT FAH is in equilibrium between a catalytically active dimer and a monomeric species, with the latter being inactive and prone to oligomerization and aggregation. We also found that the majority of the deleterious mutations reduce the kinetic stability of the enzyme and always accelerate the FAH aggregation pathway. Depending mainly on the position of the amino acid in the structure, pathogenic mutations either reduced the dimer population or decreased the energy barrier that separates the monomer from the aggregate. The mechanistic insights reported here pave the way for the development of pharmacological chaperones that target FAH to tackle the severe disease HT1.

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D002478 Cells, Cultured Cells propagated in vitro in special media conducive to their growth. Cultured cells are used to study developmental, morphologic, metabolic, physiologic, and genetic processes, among others. Cultured Cells,Cell, Cultured,Cultured Cell
D004795 Enzyme Stability The extent to which an enzyme retains its structural conformation or its activity when subjected to storage, isolation, and purification or various other physical or chemical manipulations, including proteolytic enzymes and heat. Enzyme Stabilities,Stabilities, Enzyme,Stability, Enzyme
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D006867 Hydrolases Any member of the class of enzymes that catalyze the cleavage of the substrate and the addition of water to the resulting molecules, e.g., ESTERASES, glycosidases (GLYCOSIDE HYDROLASES), lipases, NUCLEOTIDASES, peptidases (PEPTIDE HYDROLASES), and phosphatases (PHOSPHORIC MONOESTER HYDROLASES). EC 3. Hydrolase
D013816 Thermodynamics A rigorously mathematical analysis of energy relationships (heat, work, temperature, and equilibrium). It describes systems whose states are determined by thermal parameters, such as temperature, in addition to mechanical and electromagnetic parameters. (From Hawley's Condensed Chemical Dictionary, 12th ed) Thermodynamic
D020125 Mutation, Missense A mutation in which a codon is mutated to one directing the incorporation of a different amino acid. This substitution may result in an inactive or unstable product. (From A Dictionary of Genetics, King & Stansfield, 5th ed) Missense Mutation,Missense Mutations,Mutations, Missense
D020176 Tyrosinemias A group of disorders which have in common elevations of tyrosine in the blood and urine secondary to an enzyme deficiency. Type I tyrosinemia features episodic weakness, self-mutilation, hepatic necrosis, renal tubular injury, and seizures and is caused by a deficiency of the enzyme fumarylacetoacetase. Type II tyrosinemia features INTELLECTUAL DISABILITY, painful corneal ulcers, and keratoses of the palms and plantar surfaces and is caused by a deficiency of the enzyme TYROSINE TRANSAMINASE. Type III tyrosinemia features INTELLECTUAL DISABILITY and is caused by a deficiency of the enzyme 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE. (Menkes, Textbook of Child Neurology, 5th ed, pp42-3) 4 Hydroxyphenylpyruvate Dioxygenase Deficiency Disease,Fumarylacetoacetase Deficiency Disease,Tyrosine Transaminase Deficiency Disease,4-Hydroxyphenol Pyruvic Acid Oxidase Deficiency Disease,4-Hydroxyphenylpyruvate Dioxygenase Deficiency,4-Hydroxyphenylpyruvic Acid Oxidase Deficiency,Deficiency Disease, 4-Hydroxyphenol Pyruvic Acid Oxidase,Deficiency Disease, Fumarylacetoacetase,Deficiency Disease, Tyrosine Transaminase,Fumarylacetoacetase Deficiency,Hepatorenal Tyrosinemia,Hereditary Tyrosinemia, Type I,Hereditary Tyrosinemia, Type II,Hereditary Tyrosinemia, Type III,Hereditary Tyrosinemias,Hypertyrosinemia,Hypertyrosinemia, Type I,Keratosis Palmoplantaris with Corneal Dystrophy,Oregon Type Tyrosinemia,Richner-Hanhart Syndrome,Richner-Hanhart Syndrome, Tyrosinosis, Oculocutaneous Type,Tat Deficiency,Tyrosine Aminotransferase Deficiency,Tyrosine Transaminase Deficiency,Tyrosinemia,Tyrosinemia Type 1,Tyrosinemia, Type 2,Tyrosinemia, Type I,Tyrosinemia, Type II,Tyrosinemia, Type III,Tyrosinemias, Hereditary,Tyrosinosis, Oculocutaneous Type,2 Tyrosinemias, Type,4 Hydroxyphenol Pyruvic Acid Oxidase Deficiency Disease,Deficiencies, 4-Hydroxyphenylpyruvate Dioxygenase,Deficiencies, Fumarylacetoacetase,Deficiencies, Tat,Deficiency Disease, 4 Hydroxyphenol Pyruvic Acid Oxidase,Deficiency Diseases, Fumarylacetoacetase,Deficiency, 4-Hydroxyphenylpyruvate Dioxygenase,Deficiency, Fumarylacetoacetase,Deficiency, Tat,Dioxygenase Deficiencies, 4-Hydroxyphenylpyruvate,Dioxygenase Deficiency, 4-Hydroxyphenylpyruvate,Disease, Fumarylacetoacetase Deficiency,Diseases, Fumarylacetoacetase Deficiency,Fumarylacetoacetase Deficiencies,Fumarylacetoacetase Deficiency Diseases,Hepatorenal Tyrosinemias,Hereditary Tyrosinemia,Hypertyrosinemias, Type I,Oculocutaneous Type Tyrosinoses,Oculocutaneous Type Tyrosinosis,Richner Hanhart Syndrome,Richner-Hanhart Syndromes,Syndrome, Richner-Hanhart,Syndromes, Richner-Hanhart,Tat Deficiencies,Type 2 Tyrosinemia,Type 2 Tyrosinemias,Type I Hypertyrosinemia,Type I Hypertyrosinemias,Type I Tyrosinemia,Type I Tyrosinemias,Type II Tyrosinemia,Type II Tyrosinemias,Type III Tyrosinemia,Type III Tyrosinemias,Type Tyrosinoses, Oculocutaneous,Type Tyrosinosis, Oculocutaneous,Tyrosinemia Type 1s,Tyrosinemia, Hepatorenal,Tyrosinemia, Hereditary,Tyrosinemias, Hepatorenal,Tyrosinemias, Type 2,Tyrosinemias, Type I,Tyrosinemias, Type II,Tyrosinemias, Type III,Tyrosinoses, Oculocutaneous Type
D066329 Protein Aggregates Any mixture of secondary, tertiary, or quaternary protein molecules which appear as clumps in or outside the cell. Protein Aggregate,Aggregate, Protein,Aggregates, Protein

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