PCR ribotypes of Clostridioides difficile across Texas from 2011 to 2018 including emergence of ribotype 255. 2020

Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
Department of Pharmacy Practice and Translational Research, University of Houston College of Pharmacy, Houston, TX, USA.

Clostridioides difficile infection (CDI) is the most prevalent healthcare-associated infection in the United States and carries a significant healthcare system burden. As part of an ongoing, active surveillance system of C. difficile throughout Texas, the objective of this study was to assess changes in C. difficile ribotypes of clinical isolates obtained from hospitalized patients in Texas over the past seven years. Fifty hospitals located in Texas, USA sent C. difficile positive stool specimens to a centralized laboratory for PCR ribotyping and toxin characterization between 2011 and 2018. Data collected included specimen collection date, patient age, and sex. Strain genotypes were compiled, and changes in ribotype distribution over time were assessed. Overall, 7796 samples were ribotyped from predominately female patients (58.4%) aged 62 ± 19 years. Samples were obtained from all geographic regions of Texas including Houston/Southwest region (n = 5129; 85%), Dallas/North Texas (n = 579, 9.6%), Central Texas (n = 164; 2.7%), and South Texas (n = 162; 2.6%). The 10 most common ribotypes comprised 73% of all isolates tested during the study period. The most common ribotypes were 027 (17.5%), followed by 014-020 (16.1%), 106 (11.6%), and 002 (9.1%). The prevalence of ribotypes 027, 001, and 078-126 declined significantly over time, while ribotypes 106 and 054 increased in prevalence (P < 0.001). Furthermore, the emergence of a novel ribotype 255 strain was observed. Differences in ribotype distribution were also noted based on age and geographic distribution (P < 0.001, each). This seven-year study demonstrated changing molecular epidemiology of C. difficile in Texas, including the emergence of a novel ribotype 255.

UI MeSH Term Description Entries
D008297 Male Males
D008875 Middle Aged An adult aged 45 - 64 years. Middle Age
D003015 Clostridium Infections Infections with bacteria of the genus CLOSTRIDIUM and closely related CLOSTRIDIOIDES species. Clostridioides Infections,Clostridioides difficile Infection,Clostridioides perfringens Food Poisoning,Clostridioides perfringens Infections,Clostridioides sordellii Infection,Clostridium difficile Infections,Clostridium sordellii Infections,Clostridium difficile Infection,Clostridium perfringens Food Poisoning,Clostridium perfringens Infections,Clostridium sordellii Infection,Infections, Clostridium,Clostridioides Infection,Clostridioides perfringens Infection,Clostridium Infection,Clostridium perfringens Infection,Infection, Clostridioides difficile,Infection, Clostridioides sordellii,Infection, Clostridium,Infection, Clostridium difficile,Infection, Clostridium sordellii
D005260 Female Females
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D000328 Adult A person having attained full growth or maturity. Adults are of 19 through 44 years of age. For a person between 19 and 24 years of age, YOUNG ADULT is available. Adults
D000368 Aged A person 65 years of age or older. For a person older than 79 years, AGED, 80 AND OVER is available. Elderly
D013781 Texas State bounded on the north by Oklahoma, on the east by Arkansas and Louisiana, on the south by Mexico, and on the west by New Mexico.
D015373 Bacterial Typing Techniques Procedures for identifying types and strains of bacteria. The most frequently employed typing systems are BACTERIOPHAGE TYPING and SEROTYPING as well as bacteriocin typing and biotyping. Bacteriocin Typing,Biotyping, Bacterial,Typing, Bacterial,Bacterial Biotyping,Bacterial Typing,Bacterial Typing Technic,Bacterial Typing Technics,Bacterial Typing Technique,Technic, Bacterial Typing,Technics, Bacterial Typing,Technique, Bacterial Typing,Techniques, Bacterial Typing,Typing Technic, Bacterial,Typing Technics, Bacterial,Typing Technique, Bacterial,Typing Techniques, Bacterial,Typing, Bacteriocin
D015995 Prevalence The total number of cases of a given disease in a specified population at a designated time. It is differentiated from INCIDENCE, which refers to the number of new cases in the population at a given time. Period Prevalence,Point Prevalence,Period Prevalences,Point Prevalences,Prevalence, Period,Prevalence, Point,Prevalences

Related Publications

Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
October 2022, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
June 2020, Anaerobe,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
February 2019, Open forum infectious diseases,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
June 2022, Journal of medical microbiology,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
January 2012, Journal of medical microbiology,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
April 2022, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
August 2015, European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
August 2022, Anaerobe,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
July 2023, International journal of antimicrobial agents,
Anne J Gonzales-Luna, and Travis J Carlson, and Kierra M Dotson, and Kelley Poblete, and Gabriela Costa, and Julie Miranda, and Chris Lancaster, and Seth T Walk, and Shawn Tupy, and Khurshida Begum, and M Jahangir Alam, and Kevin W Garey
August 2021, Antibiotics (Basel, Switzerland),
Copied contents to your clipboard!