The antimicrobial action of chitosan against several phytopathogens in agriculture has been tested, including Penicillium digitatum, which is the major pathogen that causes postharvest decay of oranges. However, the biopolymer action has not been tested against other fungi that are capable of developing molds in orange fruit. This study have demonstrated that chitosan is able to inhibit the growth in vitro and in vivo of two Penicillium species, which were isolated from decay oranges fruit and identified as Penicillium citrinum and Penicillium mallochii, using molecular methods. This is the first report of P. mallochii acting as an orange phytopathogen. The commercial chitosan with higher molecular weight demonstrated a reduction in the disease incidence of 50-70 % for the inoculum P. citrinum and of 40 % for the inoculum P. mallochii for the in vivo experiments. The data obtained opens interesting alternative options to synthetic fungicide to prevent orange decay caused by the potential phytopathogenic species of Penicillium here identified.