Quantitation of intracardiac shunts is important in the evaluation of congenital heart disease and ventricular septal defects postmyocardial infarction. Shunt detection and quantitation is currently performed by either oximetry or radionuclide angiography. Oximetry is an invasive technique and radionuclide angiography, although noninvasive, does not have sufficient spatial resolution to provide detailed anatomic information. The present study evaluated a new technique for quantitating right-to-left shunts by analysis of indicator dilution curves acquired noninvasively using cine-CT. This technique was evaluated in a phantom and in postoperative dogs with a surgically created variable shunt. The phantom model demonstrated the accuracy and reproducibility of the curve analysis algorithm, and the canine model permitted the comparison of oximetry with cine-CT for shunt quantitation. Cine-CT accurately estimated right-to-left shunt fraction when compared with oximetry (r = 0.91) and is more sensitive than oximetry in detecting small shunts. The results of this study suggest that contrast enhanced cine-CT provides a precise noninvasive technique for measuring shunt lesions in congenital and acquired heart diseases.