HIV-1 Gag protein with or without p6 specifically dimerizes on the viral RNA packaging signal. 2020

Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
Ohio State Biochemistry Program, The Ohio State University, Columbus, Ohio, USA.

The HIV-1 Gag protein is responsible for genomic RNA (gRNA) packaging and immature viral particle assembly. Although the presence of gRNA in virions is required for viral infectivity, in its absence, Gag can assemble around cellular RNAs and form particles resembling gRNA-containing particles. When gRNA is expressed, it is selectively packaged despite the presence of excess host RNA, but how it is selectively packaged is not understood. Specific recognition of a gRNA packaging signal (Psi) has been proposed to stimulate the efficient nucleation of viral assembly. However, the heterogeneity of Gag-RNA interactions renders capturing this transient nucleation complex using traditional structural biology approaches challenging. Here, we used native MS to investigate RNA binding of wild-type (WT) Gag and Gag lacking the p6 domain (GagΔp6). Both proteins bind to Psi RNA primarily as dimers, but to a control RNA primarily as monomers. The dimeric complexes on Psi RNA require an intact dimer interface within Gag. GagΔp6 binds to Psi RNA with high specificity in vitro and also selectively packages gRNA in particles produced in mammalian cells. These studies provide direct support for the idea that Gag binding to Psi specifically promotes nucleation of Gag-Gag interactions at the early stages of immature viral particle assembly in a p6-independent manner.

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D009690 Nucleic Acid Conformation The spatial arrangement of the atoms of a nucleic acid or polynucleotide that results in its characteristic 3-dimensional shape. DNA Conformation,RNA Conformation,Conformation, DNA,Conformation, Nucleic Acid,Conformation, RNA,Conformations, DNA,Conformations, Nucleic Acid,Conformations, RNA,DNA Conformations,Nucleic Acid Conformations,RNA Conformations
D011485 Protein Binding The process in which substances, either endogenous or exogenous, bind to proteins, peptides, enzymes, protein precursors, or allied compounds. Specific protein-binding measures are often used as assays in diagnostic assessments. Plasma Protein Binding Capacity,Binding, Protein
D006801 Humans Members of the species Homo sapiens. Homo sapiens,Man (Taxonomy),Human,Man, Modern,Modern Man
D000086502 Viral Packaging Sequence Specific sequences in the viral nucleic acid that are involved in packaging the viral genome (VIRAL GENOME PACKAGING) into the VIRUS PARTICLES. Psi-RNA Packaging Signal,Viral Packaging RNA Sequence,Viral Packaging Signal Sequence,Viral RNA Packaging Signal,Viral RNA Packaging Signal Sequence,Virus Packaging Sequence,Virus Packaging Signal Sequence,Packaging Sequence, Viral,Packaging Sequence, Virus,Packaging Sequences, Viral,Packaging Sequences, Virus,Packaging Signal, Psi-RNA,Packaging Signals, Psi-RNA,Psi RNA Packaging Signal,Psi-RNA Packaging Signals,Sequence, Viral Packaging,Sequence, Virus Packaging,Sequences, Viral Packaging,Sequences, Virus Packaging,Signal, Psi-RNA Packaging,Signals, Psi-RNA Packaging,Viral Packaging Sequences,Virus Packaging Sequences
D012367 RNA, Viral Ribonucleic acid that makes up the genetic material of viruses. Viral RNA
D015497 HIV-1 The type species of LENTIVIRUS and the etiologic agent of AIDS. It is characterized by its cytopathic effect and affinity for the T4-lymphocyte. Human immunodeficiency virus 1,HIV-I,Human Immunodeficiency Virus Type 1,Immunodeficiency Virus Type 1, Human
D054301 gag Gene Products, Human Immunodeficiency Virus Proteins encoded by the GAG GENE of the HUMAN IMMUNODEFICIENCY VIRUS. gag Gene Products, HIV,gag Proteins, Human Immunodeficiency Virus
D055503 Protein Multimerization The assembly of the QUATERNARY PROTEIN STRUCTURE of multimeric proteins (MULTIPROTEIN COMPLEXES) from their composite PROTEIN SUBUNITS. Protein Dimerization,Protein Heteromultimerizaton,Protein Multimer Assembly,Protein Trimerization,Assembly, Protein Multimer,Dimerization, Protein,Heteromultimerizaton, Protein,Heteromultimerizatons, Protein,Multimer Assembly, Protein,Multimerization, Protein,Trimerization, Protein
D057809 HEK293 Cells A cell line generated from human embryonic kidney cells that were transformed with human adenovirus type 5. 293T Cells,HEK 293 Cell Line,HEK 293 Cells,Human Embryonic Kidney Cell Line 293,Human Kidney Cell Line 293,293 Cell, HEK,293 Cells, HEK,293T Cell,Cell, 293T,Cell, HEK 293,Cell, HEK293,Cells, 293T,Cells, HEK 293,Cells, HEK293,HEK 293 Cell,HEK293 Cell

Related Publications

Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
July 2017, eLife,
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
January 2016, Proceedings of the National Academy of Sciences of the United States of America,
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
July 2018, Journal of molecular biology,
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
March 2018, Retrovirology,
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
April 2014, Journal of virology,
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
April 2012, Biochemistry,
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
January 2023, eLife,
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
May 2015, Science (New York, N.Y.),
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
September 2004, Retrovirology,
Samantha Sarni, and Banhi Biswas, and Shuohui Liu, and Erik D Olson, and Jonathan P Kitzrow, and Alan Rein, and Vicki H Wysocki, and Karin Musier-Forsyth
March 2003, Journal of virology,
Copied contents to your clipboard!