OBJECTIVE Autologous bone grafts are the gold standard to augment deficient alveolar bone. Dimensional graft alterations during healing are not known as they are not accessible to radiography. Therefore, MRI was used to display autologous onlay bone grafts in vivo during early healing. METHODS Ten patients with alveolar bone atrophy and autologous onlay grafts were included. MRI was performed with a clinical MR system and an intraoral coil preoperatively (t0), 1 week (t1), 6 weeks (t2) and 12 weeks (t3) postoperatively, respectively. The graft volumes were assessed in MRI by manual segmentation by three examiners. Graft volumes for each time point were calculated and dimensional alteration was documented. Cortical and cancellous proportions of bone grafts were assessed. The intraobserver and interobserver variability were calculated. Statistical analysis was performed using a mixed linear regression model. RESULTS Autologous onlay bone grafts with cortical and cancellous properties were displayed in vivo in eight patients over 12 weeks. The fixation screws were visible as signal voids with a thin hyperintense fringe. The calculated volumes were between 0.12-0.74 cm3 (t1), 0.15-0.73 cm3 (t2), and 0.17-0.64 cm3 (t3). Median changes of bone graft volumes of -15% were observed. There was no significant difference between the examiners (p = 0.3). CONCLUSIONS MRI is eligible for the display and longitudinal observation of autologous onlay bone grafts. Image artifacts caused measurements deviations in some cases and minimized the precise assessment of graft volume. To the knowledge of the authors, this is the first study that used MRI for the longitudinal observation of autologous onlay bone grafts.