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In this study, we obtained the 16,579 base pair (bp) mitochondrial DNA sequence of Parabotia lijiangensis. The mitogenome encodes 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, a control region, and has a nucleotide composition of A: 30.8%, T: 25.2%, G: 16.1%, and C: 27.9% (AT content: 56.0%). The complete mitogenome of P. lijiangensis provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis of the Botiidae family.
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