Implications of protein folding. Additivity schemes for volumes and compressibilities. 1988

M Iqbal, and R E Verrall
Department of Chemistry, University of Saskatchewan, Saskatoon, Canada.

Partial specific volume and compressibility properties of the extended state of proteins are estimated from additivity schemes using revised amino acid and peptide data. These calculated properties are compared with the experimental data of the native state in order to assess the contribution from folding. Results of this treatment show that, in the case of partial specific volumes, there is close agreement between the two data sets for a number of proteins. The implication is that subtle compensatory contributions in volume occur during the folding process. In the case of compressibilities, however, a substantial difference is observed which is believed to arise because of the hydrophobic interior created in the native protein as a result of the folding process. Using suitable measures of protein hydrophobicities and estimates of the fraction of buried apolar residues, a "micellar model of protein compressibility" is proposed and tested for several proteins. Results obtained from this model show good agreement with the experimental data for the native state of a number of proteins.

UI MeSH Term Description Entries
D008823 Micelles Particles consisting of aggregates of molecules held loosely together by secondary bonds. The surface of micelles are usually comprised of amphiphatic compounds that are oriented in a way that minimizes the energy of interaction between the micelle and its environment. Liquids that contain large numbers of suspended micelles are referred to as EMULSIONS. Micelle
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D000465 Algorithms A procedure consisting of a sequence of algebraic formulas and/or logical steps to calculate or determine a given task. Algorithm
D000596 Amino Acids Organic compounds that generally contain an amino (-NH2) and a carboxyl (-COOH) group. Twenty alpha-amino acids are the subunits which are polymerized to form proteins. Amino Acid,Acid, Amino,Acids, Amino

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